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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10960 | AT | Annotation by Michelle Graham. TAIR10: AZA-guanine resistant1 | chr3:3424986-3426725 REVERSE LENGTH=579 | SoyBase | E_val: 0 | ISS |
| GO:0006863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport | SoyBase | N/A | ISS |
| GO:0015853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adenine transport | SoyBase | N/A | ISS |
| GO:0015854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: guanine transport | SoyBase | N/A | ISS |
| GO:0015931 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound transport | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005345 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: purine nucleobase transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0022857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR11119 | Panther | PURINE PERMEASE | JGI | ISS | |
| PTHR11119:SF9 | Panther | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER | JGI | ISS | |
| PF00860 | PFAM | Permease family | JGI | ISS | |
| UniRef100_I1N373 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N373_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SRK7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenine/guanine permease AZG1 n=1 Tax=Arabidopsis thaliana RepID=AZG1_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma18g44480 not represented in the dataset |
Glyma18g44480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g41320 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g212500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g44480.1 sequence type=CDS gene model=Glyma18g44480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCAACTACAGCTACCACCACTCTCGAGTCGCAGTTCTTCAACTGTGACTCGAATTAATTTGGTGGTGGCTCAAAGTTGCATCGGCAAATATTTTAAGCTTGTCGAGCGCAACACCACCTTCACCACTGAGCTCCGTGCTGGTACCGCCACGTTTCTCACAATGGCCTACATTCTTGCTGTCAACGCCACCATTATTGCTGACTCGGGTGGCACATGCAGCGTCTCCGATTGCACCCCTCTCTGCTCTGACCCGAAAACCTCACCCTCCCATTGCCCGACCCATCTTTTAACCCGACCCGACTCCTCATGCAAGTACCCGCCTGTCAACCCGGGCTACGCGGCGTGCGTGGAACGCACGCGCCGTGACCTCATCGTGGCCACCGTGGCCTCCTCCCTCATGGGCTCCGCCGTAATGGGCCTCTTAGCGAACCTCCCCTTAGCCCTAGCGCCCGGCATGGGCGCCAACGCGTACTTCGCCTACTCCGTGGTCGGGTTCCACGGGTCGGGTTCCGTACCCTACAAAACCGCATTAACCGCCATCTTCTTGGAAGGCCTAATCTTCCTCGTAATCTCAGCCGTCGGATTCCGCGCCAAATTGGCCAAACTCGTTCCCAAACCCGTCCGAGTCTCCTCCGCCGCCGGAATCGGTCTCTTCTTAGCCTTCATTGGGCTTCAAAGCAACGAAGGCATTGGACTCATCGGATTCAGCCCATCAACACTAGTCACTCTCGGAGGCTGCCCGAGGAACAAACTAACGGCGTTAGCTCCGGTCATCACAATTAACGGCACCGTTAGTTTAATCCCCGGCGCCACCGTCTCCGACAAGATACTATGTTCCGGGAACCGCATGGAGAGCCCAACCCTATGGCTTGGTTTGGTCGGGTTTTTCATTATTGCTTACTGTTTAATGAAGAACATAAAGGGGGCTATGATATACGGCATCGTTTTCGTAACCGTGATCTCGTGGTTCAGGAACACGCCGGTTACGGTGTTCCCGAATACCGAACTCGGTGACGCGGGGTATGAGTATTTTAAAAAGGTGGTTGACGTGCACGTGATAAAAACCACCGCAGGAGCGTTGAGTTTTGATAGCATGTGGAAAGGTGCATTCTGGGAAGCTTTGTTCACGTTTCTGTACGTTGATATATTGGACACCACGGGGACGCTGTATTCCATGGCCAGATTTGCAGGGTTTGTTGACGCCAACGGTGATTTCGAGGGGCAATATTTCGCGTTCATGGCGGACGCGTCGTCGATCGTGGTGGGGTCGCTGCTGGGGACATCGCCGGTGACGGCGTTTATCGAGTCGTCGACGGGGATACGGGAGGGGGGGAGGACGGGGCTGACGGCGGTGACGGTGGCGGGGTATTTCTTGATGGCGTTTTTTTTCACGCCGTTGCTGGCGTCGATTCCGGCGTGGGCGGTGGGGCCGCCGCTGATAGTGGTGGGGGTGATGATGGTGAGGTGTGTGGTGGAGATTGATTGGGAGGATATGAGAGAAGCGATACCGGCGTTTGTGACGATTGTGTTGATGCCGCTGACGTATTCTATTGCTTATGGGTTGATAGGGGGCATTGGGACGTACCTTGTGTTGCATGCGTGGGACTGGGGAAAGGAGGTGGTGAAGAATTTTTTTACTAAGGAGAACTTTAAGGATAATAATAATAATAATAATATACCTAATTCAAATATAAATGTAAATGCAAATAGTCGTGTTGTTGATCATGAAGAAGGATATGATGATAACAAGGTGTAG
>Glyma18g44480.1 sequence type=predicted peptide gene model=Glyma18g44480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQLQLPPLSSRSSSTVTRINLVVAQSCIGKYFKLVERNTTFTTELRAGTATFLTMAYILAVNATIIADSGGTCSVSDCTPLCSDPKTSPSHCPTHLLTRPDSSCKYPPVNPGYAACVERTRRDLIVATVASSLMGSAVMGLLANLPLALAPGMGANAYFAYSVVGFHGSGSVPYKTALTAIFLEGLIFLVISAVGFRAKLAKLVPKPVRVSSAAGIGLFLAFIGLQSNEGIGLIGFSPSTLVTLGGCPRNKLTALAPVITINGTVSLIPGATVSDKILCSGNRMESPTLWLGLVGFFIIAYCLMKNIKGAMIYGIVFVTVISWFRNTPVTVFPNTELGDAGYEYFKKVVDVHVIKTTAGALSFDSMWKGAFWEALFTFLYVDILDTTGTLYSMARFAGFVDANGDFEGQYFAFMADASSIVVGSLLGTSPVTAFIESSTGIREGGRTGLTAVTVAGYFLMAFFFTPLLASIPAWAVGPPLIVVGVMMVRCVVEIDWEDMREAIPAFVTIVLMPLTYSIAYGLIGGIGTYLVLHAWDWGKEVVKNFFTKENFKDNNNNNNIPNSNINVNANSRVVDHEEGYDDNKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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