Report for Sequence Feature Glyma18g44470
Feature Type: gene_model
Chromosome: Gm18
Start: 54162550
stop: 54169329
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g44470
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G51650 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). | chr3:19159449-19162267 FORWARD LENGTH=842
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_Q2QYN0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QYN0_ORYSJ
SoyBase E_val: 4.00E-145 ISS
UniRef100_UPI000233F569 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F569 related cluster n=1 Tax=unknown RepID=UPI000233F569
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g44470
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g44470 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g212400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g44470
Coding sequences of Glyma18g44470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g44470.1 sequence type=CDS gene model=Glyma18g44470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGTATACTGTGTGTGATTCAGAAGTGGTCTCGCCGGGTTGCTACAATGCTGCCTTGGTTGGTTATTCCGTTAATTGGTCTCTGGGCGCTCTCTCAGCTTCTGCCGCCCGCTTTTCGATTCGAGATTACTTCGCCTCGTCTTGCTTGTGTCTTTGTCTTGTTGGTTACTCTCTTTTGGTATGAGATTTTGATGCCTTGGCTGTCAGCTTGGCGTGTGCGGAGGAATGCTAGGATTAGGGAGAGGAAGAGGTTTGAGGCCATAGAAATGCAGAAGTTGAGGAAGACAGCTACGAGGCGGTGCCGCAACTGCTTGAGTCCCTATAGGGATCAGAACCCTGGTGGGGGTAGGTTTATGTGTTTTAACTGTGGCCATGTATCTAAGAGACCGGTTCTAGACTTGCCTGTGCCGCCGGGGTTGGGGATTTCTAATTCCAGTATAGTTAAGGACTTGGTTGGAAAAGGTGGCAAAATATTGAATAGCAAGGTTTGGTCTGAAAATGGATGGATGTGCGGTCAGGACTGGTTGGAGAATGGAAATTGGGTTGGTGGGTCTGTTCCAGGTAATCCTAGCAACTGGAGGACGAGTGAGAATGCTGGTGTTTTTGGAGGAGATGAGCATTGTTTGACGGAGAGGTCTTATTGTGGTCTTTTGTTTTTGGTTTGCAAGCTTTTGACATCTTTCTTCAAGAGCATTAGATGGCTCTGGGGAAAGGCTTTTACAGTTAGTTCAAGGGAAGAATGCCCTTCTGATGCTGAGGCACTCTTAGCTAAAAGGGGTGAAAATGAGGCAAGCCTCAATGAAAGTAGAGGGGAAAAAGCACGTAGGAAAGCTGAGGAGAAAAGGCAGGCTAGGCTAGAGAAAGAACTATTGGAGGAGGAAGAGAGAAAACAGAGGGAGGAGGTTTCAAGGTTAGTGGAGGAGCGTAGGAAACTGAGAGATGAAAAAGTGGAAGCTGAAAAAGATCACAGCAGATCATCAAATCTCAGTAAGGAGAAGGACCGTCAGAAGGAAGCTGAAAAGAAGCGTCAGGAAAAAAGAAAAGAGAAAGATAAGGGGTCTAGTAAGAGCAACTCTGATGTTGAAGAATTGGAAAGAAGAGCTGGCAAGGAAAGTGAACGGAAGCGGGATTTCGACAAAAAGAGTGAAATGGATCGTAGGGAGCATCAGAAATCTGGGTTAGAGAGTGGCAAGGGACAGAATACCAACAATGCACAAAATAAAAATGTCACTGCAAACAATTATAACCGAGGAGGTACTGGAACAAGGTATCTTGACCGCATGCGGGGCACAATTTTGTCCTCTTCAAAAGCATTTGGTTTTGGTAGGGGTATTAATGTTCCTAGCACTGTGGTGAAAGAAAACAAGTTTAATAGTTCTGTAGATCATGTTCATAGCAGGAGAGAAATATGTCCTCCTGAGCGTCCAGCTGCAAAATCCAATGTAAATGGAGATGATAGGAATATCAATCACCCTGTACTCCCTGAACCACAACCATGGACAGCAGCACCTAAAAAGTCATGGCAGCAATTATTTACTCGATCTTCACCTGCTCCTCAATCTTCAAATTCAAATGTAATATGCAGGCCAAATTCCAAAATTCAAGCAGAAGTCAAAAGCCCTCAGTTGTCTGCCCAGTCACCAGTTACACAGTCATTTACTAATCCTATTCAGTTTGGTCTTCCATCACCATTTAATATTTCCACCCATGCAAGTGGACCAACCAGTAGTAGTCTAGGTTTTTCTCCTGCTATTGAACCATTTTTTCCTCCAGTTGGAAATACATCACATGACTTTAGACAAGATGAGCAAGAGCTTTTTGAAGATCCCTGTTATGTTCCAGATCCAGTATCCTTGCTTGGGCCTGTTTCTGAGTCACTTGATAATTTTCAGTTGGACTTGGGAATTGGCTTTGGAACAGACAATGAAATGACAAAACCTCACTCTTTGAAAAGCATATCTGCTGGTTCTGATGTTAATAAGCCATCTCTGATTGAATCCCCATCATCCCGAGAAAAGCATAGCTGTTCTAATTGGTTTCCAAGTACCCCGAATGGCCAAGACAAGCATGGTTTTCCTCTGGATGATGCAGCTGCAAATGAGAAGGGAACATGGCAGATGTGGAGTACTTCTCCACTTGGGCAAGAAGGTTTAGGTTTAGTTGGTGGCGCAGGAAGCTGGCTGTTATCCTCACAAAGGAACATACCAAACAAGGATGATTTTGTGCTTTCTTCATCTCAGAAGACTATGGCTTCTCTTTTTAACAAAGAAGATAACATAATTTCCAGTACCCATTCTCCACAAAATGTTTTTCTTCCTAATGGCCAAAGTGGTGAGAACTTCAGCCCTGTTACAGGTTCAAGTGGTTATGATCCTTGGTTACAAAGTGCTCTCTTCCCACCATTGTCAGGTGGCCCTTCAGCTCAGGAGGGAGCCACTCAAAATGAAACTATATATGGTAGCCCAAGTGGATCTGCTAGTAGCCATGGGCTTGATGGTTCTCCAGCTAACTGTTGGTCCAAAAAGGAATGGCCTGTACATGGTTCTGTGGAAAGCATTGGAAAGTCTGCTGTTTCAAGGCCTTATAGTGGAGGTCTACACCCAACCTCCGATGTACAGTCGTTTTGGTCTTTTGATTAA
Predicted protein sequences of Glyma18g44470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g44470.1 sequence type=predicted peptide gene model=Glyma18g44470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MCILCVIQKWSRRVATMLPWLVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLVTLFWYEILMPWLSAWRVRRNARIRERKRFEAIEMQKLRKTATRRCRNCLSPYRDQNPGGGRFMCFNCGHVSKRPVLDLPVPPGLGISNSSIVKDLVGKGGKILNSKVWSENGWMCGQDWLENGNWVGGSVPGNPSNWRTSENAGVFGGDEHCLTERSYCGLLFLVCKLLTSFFKSIRWLWGKAFTVSSREECPSDAEALLAKRGENEASLNESRGEKARRKAEEKRQARLEKELLEEEERKQREEVSRLVEERRKLRDEKVEAEKDHSRSSNLSKEKDRQKEAEKKRQEKRKEKDKGSSKSNSDVEELERRAGKESERKRDFDKKSEMDRREHQKSGLESGKGQNTNNAQNKNVTANNYNRGGTGTRYLDRMRGTILSSSKAFGFGRGINVPSTVVKENKFNSSVDHVHSRREICPPERPAAKSNVNGDDRNINHPVLPEPQPWTAAPKKSWQQLFTRSSPAPQSSNSNVICRPNSKIQAEVKSPQLSAQSPVTQSFTNPIQFGLPSPFNISTHASGPTSSSLGFSPAIEPFFPPVGNTSHDFRQDEQELFEDPCYVPDPVSLLGPVSESLDNFQLDLGIGFGTDNEMTKPHSLKSISAGSDVNKPSLIESPSSREKHSCSNWFPSTPNGQDKHGFPLDDAAANEKGTWQMWSTSPLGQEGLGLVGGAGSWLLSSQRNIPNKDDFVLSSSQKTMASLFNKEDNIISSTHSPQNVFLPNGQSGENFSPVTGSSGYDPWLQSALFPPLSGGPSAQEGATQNETIYGSPSGSASSHGLDGSPANCWSKKEWPVHGSVESIGKSAVSRPYSGGLHPTSDVQSFWSFD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
