Glyma18g44420 - SoyBase

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Report for Sequence Feature Glyma18g44420

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54106753
stop:	54110567
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51730	AT	Annotation by Michelle Graham. TAIR10: saposin B domain-containing protein \| chr3:19186970-19188436 FORWARD LENGTH=213	SoyBase	E_val: 3.00E-57	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1340	KOG	Prosaposin	JGI		ISS
PTHR11480	Panther	SAPOSIN-RELATED	JGI		ISS
PTHR11480:SF2	Panther	ECDYSONE DEPENDENT GLYCOPROTEIN	JGI		ISS
PF03489	PFAM	Saposin-like type B, region 2	JGI		ISS
PF05184	PFAM	Saposin-like type B, region 1	JGI		ISS
UniRef100_G7KX29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Saposin B domain-containing protein n=2 Tax=Medicago truncatula RepID=G7KX29_MEDTR	SoyBase	E_val: 1.00E-103	ISS
UniRef100_I1N368	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N368_SOYBN	SoyBase	E_val: 5.00E-155	ISS

Expression Patterns of Glyma18g44420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44420

Paralog	Evidence	Comments
Glyma09g41360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g211900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g44420

Limit To All Plant Sequences

>Glyma18g44420.3   sequence type=transcript   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCTTGCTTGCAATGAAAACTACTCAGAAAAGTAGTATTCTTTTGTCTCTTTACTTGCCACCTACCAATCCTCAAAGTTTATCATTTCCAACTACTCTTCTTTATTTGTCACCTGATCATGTGATGCATCATTCATATGTTGTCTATTGTTATGTTAATTGGTCTTGCTAGTTGCTAGCACATCAATTTCTATTATGTGTTGGATGACATCATGGTTCAGCCAGATTCTATTTTTTTCTGGTACCATGGAAGGGAGAATGGGACTGTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATGCAAGGGAACTGGCTAACTCTGAAACTTCTGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACTGAGACAGAGATCATTAGTATCCTGCACAACACTTGCCACCAGCTTCCTTCTTTCAAGCAGAAGTGCGTTGCTTTGGTGGACTATTATGTTCCTCTTTTCTTCTCGGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAAGTCAATCTCTGTCAGGACATTGCACATATTTCCTTGAAAGTTCAAGAAGATAGCTGTGAGTTTTGCAAAGATACTGTTTCAACTCTATTGGAGAAGTTGAAGGAGAGTGACACTAAGCTAGAGATAATTGAGACATTACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTCGAGTATGGACCCTTGATTTTTGACCATGCAGAGAAAATCCTAGAGACGACAGATATATGCAATATAATACATGCCTGCAAATCTTCAGATGTAGCTGGACAGCAAGCCTTTCTTTCGGTCTCTTAATTATAGAAACAAAGCTCTACCAGATTTATGCTTCACTTGTTGGCTGAAAGATTGCCATATATTCAAATATAATAAGGGGGAGGGGGAGTACAAATTCGATACGTTATCAGCGCAAAATTTTTAATACTATCTAAATTTCTAATTATGTGTCAGCACATCATCAAAAAAGTTGAAACTTAAGTTGAAACTTCCTGTGTAGTAGTGGCTGTGATACTCATGCTTGTTTAATTATTTTACAATACATAATTGAATGTTAACATTCTGAATAAGAGTGTTTGTGGTTCGGTTTAGTTTTATTTTTTTAAAAAGTCACTCGAACTAAACTTATGAAATATATGAGA

>Glyma18g44420.4   sequence type=transcript   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAAACTCACTTTGCAATAAAACCAACCAATGCAAGTGAAGATAGCAAACCAATCATATTTTCAGTTTTTCACCAACTAACACAACACTATAAGTTCCTACGAGGAATCACTTCACTACCACCTTGTTTTCCATTATCTTCAATTCTTCTTCTCATCATTTCTTTTCACACAAAAAGGTACCATGGAAGGGAGAATGGGACTGTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATGCAAGGGAACTGGCTAACTCTGAAACTTCTGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACTGAGACAGAGATCATTAGTATCCTGCACAACACTTGCCACCAGCTTCCTTCTTTCAAGCAGAAGTGCGTTGCTTTGGTGGACTATTATGTTCCTCTTTTCTTCTCGGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAAGTCAATCTCTGTCAGGACATTGCACATATTTCCTTGAAAGTTCAAGAAGATAGCTGTGAGTTTTGCAAAGATACTGTTTCAACTCTATTGGAGAAGTTGAAGGAGAGTGACACTAAGCTAGAGATAATTGAGACATTACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTCGAGTATGGACCCTTGATTTTTGACCATGCAGAGAAAATCCTAGAGACGACAGATATATGCAATATAATACATGCCTGCAAATCTTCAGATGTAGCTGGACAGCAAGCCTTTCTTTCGGTCTCTTAATTATAGAAACAAAGCTCTACCAGATTTATGCTTCACTTGTTGGCTGAAAGATTGCCATATATTCAAATATAATAAGGGGGAGGGGGAGTACAAATTCGATACGTTATCAGCGCAAAATTTTTAATACTATCTAAATTTCTAATTATGTGTCAGCACATCATCAAAAAAGTTGAAACTTAAGTTGAAACTTCCTGTGTAGTAGTGGCTGTGATACTCATGCTTGTTTAATTATTTTACAATACATAATTGAATGTTAACATTCTGAATAAGAGTGTTTGTGGTTCGGTTTAGTTTTATTTTTTTAAAAAGTCACTCGAACTAAACTTATGAAATATATGAGA

>Glyma18g44420.5   sequence type=transcript   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCTTGCTTGCAATGAAAACTACTCAGAAAAGTAGTATTCTTTTGTCTCTTTACTTGCCACCTACCAATCCTCAAAGTTTATCATTTCCAACTACTCTTCTTTATTTGTCACCTGATCATGTACCATGGAAGGGAGAATGGGACTGTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATGCAAGGGAACTGGCTAACTCTGAAACTTCTGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACTGAGACAGAGATCATTAGTATCCTGCACAACACTTGCCACCAGCTTCCTTCTTTCAAGCAGAAGTGCGTTGCTTTGGTGGACTATTATGTTCCTCTTTTCTTCTCGGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAAGTCAATCTCTGTCAGGACATTGCACATATTTCCTTGAAAGTTCAAGAAGATAGCTGTGAGTTTTGCAAAGATACTGTTTCAACTCTATTGGAGAAGTTGAAGGAGAGTGACACTAAGCTAGAGATAATTGAGACATTACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTCGAGTATGGACCCTTGATTTTTGACCATGCAGAGAAAATCCTAGAGACGACAGATATATGCAATATAATACATGCCTGCAAATCTTCAGATGTAGCTGGACAGCAAGCCTTTCTTTCGGTCTCTTAATTATAGAAACAAAGCTCTACCAGATTTATGCTTCACTTGTTGGCTGAAAGATTGCCATATATTCAAATATAATAAGGGGGAGGGGGAGTACAAATTCGATACGTTATCAGCGCAAAATTTTTAATACTATCTAAATTTCTAATTATGTGTCAGCACATCATCAAAAAAGTTGAAACTTAAGTTGAAACTTCCTGTGTAGTAGTGGCTGTGATACTCATGCTTGTTTAATTATTTTACAATACATAATTGAATGTTAACATTCTGAATAAGAGTGTTTGTGGTTCGGTTTAGTTTTATTTTTTTAAAAAGTCACTCGAACTAAACTTATGAAATATATGAGA

Coding sequences of Glyma18g44420

Limit To All Plant Sequences

>Glyma18g44420.2   sequence type=CDS   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTAACTCTTAATATGCCTTTTTCTGCTTCTGTGGGTGCAACTTTGTGCCAAAATCAATATGGTACCATGGAAGGGAGAATGGGACTGTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATGCAAGGGAACTGGCTAACTCTGAAACTTCTGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACTGAGACAGAGATCATTAGTATCCTGCACAACACTTGCCACCAGCTTCCTTCTTTCAAGCAGAAGTGCGTTGCTTTGGTGGACTATTATGTTCCTCTTTTCTTCTCGGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAAGTCAATCTCTGTCAGGACATTGCACATATTTCCTTGAAAGTTCAAGAAGATAGCTGTGAGTTTTGCAAAGATACTGTTTCAACTCTATTGGAGAAGTTGAAGGAGAGTGACACTAAGCTAGAGATAATTGAGACATTACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTCGAGTATGGACCCTTGATTTTTGACCATGCAGAGAAAATCCTAGAGACGACAGATATATGCAATATAATACATGCCTGCAAATCTTCAGATGTAGCTGGACAGCAAGCCTTTCTTTCGGTCTCTTAA

>Glyma18g44420.3   sequence type=CDS   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTGGATGACATCATGGTTCAGCCAGATTCTATTTTTTTCTGGTACCATGGAAGGGAGAATGGGACTGTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATGCAAGGGAACTGGCTAACTCTGAAACTTCTGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACTGAGACAGAGATCATTAGTATCCTGCACAACACTTGCCACCAGCTTCCTTCTTTCAAGCAGAAGTGCGTTGCTTTGGTGGACTATTATGTTCCTCTTTTCTTCTCGGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAAGTCAATCTCTGTCAGGACATTGCACATATTTCCTTGAAAGTTCAAGAAGATAGCTGTGAGTTTTGCAAAGATACTGTTTCAACTCTATTGGAGAAGTTGAAGGAGAGTGACACTAAGCTAGAGATAATTGAGACATTACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTCGAGTATGGACCCTTGATTTTTGACCATGCAGAGAAAATCCTAGAGACGACAGATATATGCAATATAATACATGCCTGCAAATCTTCAGATGTAGCTGGACAGCAAGCCTTTCTTTCGGTCTCTTAA

>Glyma18g44420.4   sequence type=CDS   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGGAGAATGGGACTGTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATGCAAGGGAACTGGCTAACTCTGAAACTTCTGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACTGAGACAGAGATCATTAGTATCCTGCACAACACTTGCCACCAGCTTCCTTCTTTCAAGCAGAAGTGCGTTGCTTTGGTGGACTATTATGTTCCTCTTTTCTTCTCGGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAAGTCAATCTCTGTCAGGACATTGCACATATTTCCTTGAAAGTTCAAGAAGATAGCTGTGAGTTTTGCAAAGATACTGTTTCAACTCTATTGGAGAAGTTGAAGGAGAGTGACACTAAGCTAGAGATAATTGAGACATTACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTCGAGTATGGACCCTTGATTTTTGACCATGCAGAGAAAATCCTAGAGACGACAGATATATGCAATATAATACATGCCTGCAAATCTTCAGATGTAGCTGGACAGCAAGCCTTTCTTTCGGTCTCTTAA

>Glyma18g44420.5   sequence type=CDS   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGGAGAATGGGACTGTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATGCAAGGGAACTGGCTAACTCTGAAACTTCTGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACTGAGACAGAGATCATTAGTATCCTGCACAACACTTGCCACCAGCTTCCTTCTTTCAAGCAGAAGTGCGTTGCTTTGGTGGACTATTATGTTCCTCTTTTCTTCTCGGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAAGTCAATCTCTGTCAGGACATTGCACATATTTCCTTGAAAGTTCAAGAAGATAGCTGTGAGTTTTGCAAAGATACTGTTTCAACTCTATTGGAGAAGTTGAAGGAGAGTGACACTAAGCTAGAGATAATTGAGACATTACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTCGAGTATGGACCCTTGATTTTTGACCATGCAGAGAAAATCCTAGAGACGACAGATATATGCAATATAATACATGCCTGCAAATCTTCAGATGTAGCTGGACAGCAAGCCTTTCTTTCGGTCTCTTAA

Predicted protein sequences of Glyma18g44420

Limit To All Plant Sequences

>Glyma18g44420.2   sequence type=predicted peptide   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLTLNMPFSASVGATLCQNQYGTMEGRMGLLFLVVLGAAWACDARELANSETSELSIKPDVCALCEEYITKALDYLHENKTETEIISILHNTCHQLPSFKQKCVALVDYYVPLFFSEVATIQPGEFCHKVNLCQDIAHISLKVQEDSCEFCKDTVSTLLEKLKESDTKLEIIETLLKVCNSVEKYANKCKRMVFEYGPLIFDHAEKILETTDICNIIHACKSSDVAGQQAFLSVS*

>Glyma18g44420.3   sequence type=predicted peptide   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCWMTSWFSQILFFSGTMEGRMGLLFLVVLGAAWACDARELANSETSELSIKPDVCALCEEYITKALDYLHENKTETEIISILHNTCHQLPSFKQKCVALVDYYVPLFFSEVATIQPGEFCHKVNLCQDIAHISLKVQEDSCEFCKDTVSTLLEKLKESDTKLEIIETLLKVCNSVEKYANKCKRMVFEYGPLIFDHAEKILETTDICNIIHACKSSDVAGQQAFLSVS*

>Glyma18g44420.4   sequence type=predicted peptide   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRMGLLFLVVLGAAWACDARELANSETSELSIKPDVCALCEEYITKALDYLHENKTETEIISILHNTCHQLPSFKQKCVALVDYYVPLFFSEVATIQPGEFCHKVNLCQDIAHISLKVQEDSCEFCKDTVSTLLEKLKESDTKLEIIETLLKVCNSVEKYANKCKRMVFEYGPLIFDHAEKILETTDICNIIHACKSSDVAGQQAFLSVS*

>Glyma18g44420.5   sequence type=predicted peptide   gene model=Glyma18g44420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRMGLLFLVVLGAAWACDARELANSETSELSIKPDVCALCEEYITKALDYLHENKTETEIISILHNTCHQLPSFKQKCVALVDYYVPLFFSEVATIQPGEFCHKVNLCQDIAHISLKVQEDSCEFCKDTVSTLLEKLKESDTKLEIIETLLKVCNSVEKYANKCKRMVFEYGPLIFDHAEKILETTDICNIIHACKSSDVAGQQAFLSVS*

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