Glyma18g44410 - SoyBase

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Report for Sequence Feature Glyma18g44410

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54098635
stop:	54102413
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38370	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) \| chr2:16072184-16074168 REVERSE LENGTH=522	SoyBase	E_val: 2.00E-99	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05701	PFAM	Plant protein of unknown function (DUF827)	JGI		ISS
UniRef100_Q10LQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q10LQ3_ORYSJ	SoyBase	E_val: 1.00E-104	ISS
UniRef100_UPI000233E84A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E84A related cluster n=1 Tax=unknown RepID=UPI000233E84A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44410

Paralog	Evidence	Comments
Glyma09g41370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma19g28840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g211800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g44410

Limit To All Plant Sequences

>Glyma18g44410.3   sequence type=transcript   gene model=Glyma18g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCTCTTTAATTGGTTTATGGCATTGCCACAAAATAGCACCCCGCAAGGTGAAATGTTATCATTTCGTTGTTTTCGTTTGTTGCTTCACTCTTCGGTGGAAAAAGCACCACAGAGAAGAGGTCAGCGCTGAAAAACTGGAGGAGCAGGCTGTGGTACTGGAGAAAGAACTGATCTTGAAAGAAAGGGAAACTCTTGATGTGTTGAAAGAACTGGAAAGTACCAAAAGGCTTGTTGAAGATTTGAAATCAAAGATACAGAAGGAAGAGTCTGAAGCAAATTTGAATCTTCAGATGGGAAAATATGATAAGAAATCGGTTGTTGATGAGAATGTAGAAAAGGAAAACCAAATGAGTCAATTGAATGTTCTTCAACCTTCCAGGGAAGGTTTTATCCCCTACCCTTCATCTACTCCAGGCTTAATACTAATGGAATTGAAGCAGGCCAAATTGAATTTAACTAAAACTACTAATGACCTTGCTGACGTCCAAACTTCTGTTGAATCGCTTAATAAGAAGTTAGAGAAGGAAAGAATCTCACTTGAGAAAACACGTGATAGGTTAGCTCAAAATACTTTGAAGATATCTTCTCTCGAGGAAGAGCTAAACCAGACCAGATTAAGGCTTCAAATAGCAAAAGATGCTGAAATTAAAGGTGCTTTAGATGACCCTTCAGATATTACAAGAGAGCTCCAGCAATTAAGTTCTGAGGCAGAGAATTTCAAAAGAATGGGAGAATTTGCAAAATCAGAAGTTTTGAGATCAATGTCTGAGATTGAACAGACAAAAACCATGATAAGAACTGCTGAAATCAGATTGCTAGCAGCCAGAAAAATGAAAGAAGCCGCTAGAGCTGCCGAAGCTTTTGCCCTTGCAGAAATTAATGCTCTATCTAATCATGACAGTTCACCTGGAAATCAGGTTACTCTTTCATTTGAGGAGTATACTGCTCTGATGGGCAAAGCTCGAGATGCAGAGGAACAATCTAAGCAGAGAGTTGCAAGTGCTACGCTTGAAGTTGACGAAGCAAATTTAGCAAACATGGACATTTTGAAAAGGGTAGAAGAAGCTACAGGACAAGTTAAAACCAGCAAGAAGGCCCTTGAAGAAGCTCTAGAAAGGGTAGAAGCTGCAAATAGAGACAAGGTAGCAGTTGAAGAGGCTTTAAGGAATTGGCGGTCCGAGGGTCAAAAAAAGCGTTCTTCTATACACAACTCTACTAAGTTCAAAAACTGTTGCTTGTCTCATCATCGGAGAGATCCTCGATTACTCGATGTGAATGGAATGCATTTGGTAAATGATGAAGCCAGGCCAGTTCTAAAGCCAACCCTATCAATAGGACAAATACTTAGCAGGAAGCTGCTTCAACCACAAGAGTTTGAAGCCAGAGAAGGAATCTCGATGAAACAGAATGTGTCACTGGGTAAGATGCTTGGCAAACAGAACAATGATCGGCCAGTTGACAGACAAGTTGAGAAAGAAACTGGCCATAAGCTGTTTTCTACCAAGAGAAAGAAATTTGGATTTGCACGATTCTCACATATTTTGTCAAAACAGAAGAAGAAGAAGCCAACCCTGAATTTGAGGTGATAAATTGTTTGAACAATTTGATCAATCTAGCAGTGACAAAAGCTAGACTCTAGTTGCATCTTCTAAATCAGTCCTTGTCTCATTCTCTTATTGTGCTTGCTTGAATATCTTGTTTTTTTTAACAGTGTTTATTTAGCTTTCAGTCCCTGCTTTTGTATATTAACTACTTATTAGGTATGCACTTCCATTTGCTTCCTATGCTAGTTGTAGAGATGATTCATACGAATTCTTAACCTCTTGCATGATGTGTTATAATTTTAATTTGCCATTTATGTGTGTACAATAGCAGCTATGAGATTTAAACTTAGGATTTCATGCAAATTACTCGAACCTTTTTTTTTTA

Coding sequences of Glyma18g44410

Limit To All Plant Sequences

>Glyma18g44410.2   sequence type=CDS   gene model=Glyma18g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTTGGTTCCGTTTGTTTTGTGATGGAAATGGAAGCCGCTGACGTGGTCGAAACGACGACGAATCATGCCGAACGGGGTTTGGAGAAGAAGAACAACAAGAGTGGTTTGAGAACGGAGATTGATACTTCAGCGCCCTTTGAATCGGTGAAGGAAGCTGTTACTATGTTCGGGGGTGGTTACTGGAAATCACCCCTTCACAGTAATATTACGTGTGTGGCTTCTGGTTCTGAGCACCACAGAGAAGAGGTCAGCGCTGAAAAACTGGAGGAGCAGGCTGTGGTACTGGAGAAAGAACTGATCTTGAAAGAAAGGGAAACTCTTGATGTGTTGAAAGAACTGGAAAGTACCAAAAGGCTTGTTGAAGATTTGAAATCAAAGATACAGAAGGAAGAGTCTGAAGCAAATTTGAATCTTCAGATGGGAAAATATGATAAGAAATCGGTTGTTGATGAGAATGTAGAAAAGGAAAACCAAATGAGTCAATTGAATGTTCTTCAACCTTCCAGGGAAGGTTTTATCCCCTACCCTTCATCTACTCCAGGCTTAATACTAATGGAATTGAAGCAGGCCAAATTGAATTTAACTAAAACTACTAATGACCTTGCTGACGTCCAAACTTCTGTTGAATCGCTTAATAAGAAGTTAGAGAAGGAAAGAATCTCACTTGAGAAAACACGTGATAGGTTAGCTCAAAATACTTTGAAGATATCTTCTCTCGAGGAAGAGCTAAACCAGACCAGATTAAGGCTTCAAATAGCAAAAGATGCTGAAATTAAAGGTGCTTTAGATGACCCTTCAGATATTACAAGAGAGCTCCAGCAATTAAGTTCTGAGGCAGAGAATTTCAAAAGAATGGGAGAATTTGCAAAATCAGAAGTTTTGAGATCAATGTCTGAGATTGAACAGACAAAAACCATGATAAGAACTGCTGAAATCAGATTGCTAGCAGCCAGAAAAATGAAAGAAGCCGCTAGAGCTGCCGAAGCTTTTGCCCTTGCAGAAATTAATGCTCTATCTAATCATGACAGTTCACCTGGAAATCAGGTTACTCTTTCATTTGAGGAGTATACTGCTCTGATGGGCAAAGCTCGAGATGCAGAGGAACAATCTAAGCAGAGAGTTGCAAGTGCTACGCTTGAAGTTGACGAAGCAAATTTAGCAAACATGGACATTTTGAAAAGGGTAGAAGAAGCTACAGGACAAGTTAAAACCAGCAAGAAGGCCCTTGAAGAAGCTCTAGAAAGGGTAGAAGCTGCAAATAGAGACAAGGTAGCAGTTGAAGAGGCTTTAAGGAATTGGCGGTCCGAGGGTCAAAAAAAGCGTTCTTCTATACACAACTCTACTAAGTTCAAAAACTGTTGCTTGTCTCATCATCGGAGAGATCCTCGATTACTCGATGTGAATGGAATGCATTTGGTAAATGATGAAGCCAGGCCAGTTCTAAAGCCAACCCTATCAATAGGACAAATACTTAGCAGGAAGCTGCTTCAACCACAAGAGTTTGAAGCCAGAGAAGGAATCTCGATGAAACAGAATGTGTCACTGGGTAAGATGCTTGGCAAACAGAACAATGATCGGCCAGTTGACAGACAAGTTGAGAAAGAAACTGGCCATAAGCTGTTTTCTACCAAGAGAAAGAAATTTGGATTTGCACGATTCTCACATATTTTGTCAAAACAGAAGAAGAAGAAGCCAACCCTGAATTTGAGGTGA

>Glyma18g44410.3   sequence type=CDS   gene model=Glyma18g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAATATGATAAGAAATCGGTTGTTGATGAGAATGTAGAAAAGGAAAACCAAATGAGTCAATTGAATGTTCTTCAACCTTCCAGGGAAGGTTTTATCCCCTACCCTTCATCTACTCCAGGCTTAATACTAATGGAATTGAAGCAGGCCAAATTGAATTTAACTAAAACTACTAATGACCTTGCTGACGTCCAAACTTCTGTTGAATCGCTTAATAAGAAGTTAGAGAAGGAAAGAATCTCACTTGAGAAAACACGTGATAGGTTAGCTCAAAATACTTTGAAGATATCTTCTCTCGAGGAAGAGCTAAACCAGACCAGATTAAGGCTTCAAATAGCAAAAGATGCTGAAATTAAAGGTGCTTTAGATGACCCTTCAGATATTACAAGAGAGCTCCAGCAATTAAGTTCTGAGGCAGAGAATTTCAAAAGAATGGGAGAATTTGCAAAATCAGAAGTTTTGAGATCAATGTCTGAGATTGAACAGACAAAAACCATGATAAGAACTGCTGAAATCAGATTGCTAGCAGCCAGAAAAATGAAAGAAGCCGCTAGAGCTGCCGAAGCTTTTGCCCTTGCAGAAATTAATGCTCTATCTAATCATGACAGTTCACCTGGAAATCAGGTTACTCTTTCATTTGAGGAGTATACTGCTCTGATGGGCAAAGCTCGAGATGCAGAGGAACAATCTAAGCAGAGAGTTGCAAGTGCTACGCTTGAAGTTGACGAAGCAAATTTAGCAAACATGGACATTTTGAAAAGGGTAGAAGAAGCTACAGGACAAGTTAAAACCAGCAAGAAGGCCCTTGAAGAAGCTCTAGAAAGGGTAGAAGCTGCAAATAGAGACAAGGTAGCAGTTGAAGAGGCTTTAAGGAATTGGCGGTCCGAGGGTCAAAAAAAGCGTTCTTCTATACACAACTCTACTAAGTTCAAAAACTGTTGCTTGTCTCATCATCGGAGAGATCCTCGATTACTCGATGTGAATGGAATGCATTTGGTAAATGATGAAGCCAGGCCAGTTCTAAAGCCAACCCTATCAATAGGACAAATACTTAGCAGGAAGCTGCTTCAACCACAAGAGTTTGAAGCCAGAGAAGGAATCTCGATGAAACAGAATGTGTCACTGGGTAAGATGCTTGGCAAACAGAACAATGATCGGCCAGTTGACAGACAAGTTGAGAAAGAAACTGGCCATAAGCTGTTTTCTACCAAGAGAAAGAAATTTGGATTTGCACGATTCTCACATATTTTGTCAAAACAGAAGAAGAAGAAGCCAACCCTGAATTTGAGGTGA

Predicted protein sequences of Glyma18g44410

Limit To All Plant Sequences

>Glyma18g44410.2   sequence type=predicted peptide   gene model=Glyma18g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFGSVCFVMEMEAADVVETTTNHAERGLEKKNNKSGLRTEIDTSAPFESVKEAVTMFGGGYWKSPLHSNITCVASGSEHHREEVSAEKLEEQAVVLEKELILKERETLDVLKELESTKRLVEDLKSKIQKEESEANLNLQMGKYDKKSVVDENVEKENQMSQLNVLQPSREGFIPYPSSTPGLILMELKQAKLNLTKTTNDLADVQTSVESLNKKLEKERISLEKTRDRLAQNTLKISSLEEELNQTRLRLQIAKDAEIKGALDDPSDITRELQQLSSEAENFKRMGEFAKSEVLRSMSEIEQTKTMIRTAEIRLLAARKMKEAARAAEAFALAEINALSNHDSSPGNQVTLSFEEYTALMGKARDAEEQSKQRVASATLEVDEANLANMDILKRVEEATGQVKTSKKALEEALERVEAANRDKVAVEEALRNWRSEGQKKRSSIHNSTKFKNCCLSHHRRDPRLLDVNGMHLVNDEARPVLKPTLSIGQILSRKLLQPQEFEAREGISMKQNVSLGKMLGKQNNDRPVDRQVEKETGHKLFSTKRKKFGFARFSHILSKQKKKKPTLNLR*

>Glyma18g44410.3   sequence type=predicted peptide   gene model=Glyma18g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKYDKKSVVDENVEKENQMSQLNVLQPSREGFIPYPSSTPGLILMELKQAKLNLTKTTNDLADVQTSVESLNKKLEKERISLEKTRDRLAQNTLKISSLEEELNQTRLRLQIAKDAEIKGALDDPSDITRELQQLSSEAENFKRMGEFAKSEVLRSMSEIEQTKTMIRTAEIRLLAARKMKEAARAAEAFALAEINALSNHDSSPGNQVTLSFEEYTALMGKARDAEEQSKQRVASATLEVDEANLANMDILKRVEEATGQVKTSKKALEEALERVEAANRDKVAVEEALRNWRSEGQKKRSSIHNSTKFKNCCLSHHRRDPRLLDVNGMHLVNDEARPVLKPTLSIGQILSRKLLQPQEFEAREGISMKQNVSLGKMLGKQNNDRPVDRQVEKETGHKLFSTKRKKFGFARFSHILSKQKKKKPTLNLR*

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