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Report for Sequence Feature Glyma18g44391

Feature Type:gene_model
Chromosome:Gm18
Start:54090886
stop:54092979
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g44391
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63180AT Annotation by Michelle Graham. TAIR10: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 | chr1:23427559-23429384 REVERSE LENGTH=351 SoyBaseE_val: 3.00E-32ISS
GO:0006012GO-bp Annotation by Michelle Graham. GO Biological Process: galactose metabolic process SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0003978GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 4-epimerase activity SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF39Panther CDP-3, 6-DIDEOXY-D-GLYCERO-L-GLYCERO-4-HEXULOSE-4-REDUCTASE JGI ISS
PF10440PFAM WIYLD domain JGI ISS
UniRef100_I1L935UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L935_SOYBN SoyBaseE_val: 5.00E-58ISS
UniRef100_O65780UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 4-epimerase GEPI42 n=1 Tax=Cyamopsis tetragonoloba RepID=GALE1_CYATE SoyBaseE_val: 2.00E-34ISS

Expression Patterns of Glyma18g44391
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g44391 not represented in the dataset
Glyma18g44391 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g44391 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g44391
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g44391
>Glyma18g44391.1   sequence type=CDS   gene model=Glyma18g44391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGTGCTTACACCACCATCACCGCCGATGCCATTGCTCGCTTCCAGGAGCTTCTTCAGGTGTATGGTGGAAATCAAGGATGGTGCTTTATTGAAGAGGCCTATTACAAGCTCCTAATGGAGGCCCTACTTAGCAAACAACAAGGTTCTGCAGAATATAAGAAAATTCCATTAAAAATGTGTCCCAGAAGACCCGGGGATGCTACTGCTGTATATGCATCTACGGACAAGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATACGGTATAGAGGAAATGTGCAGGGATTTGTGGAATTGGACAAGCAAAAATCCATGGGGATACCAGGGGAAGCATTAA
Predicted protein sequences of Glyma18g44391
>Glyma18g44391.1   sequence type=predicted peptide   gene model=Glyma18g44391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSAYTTITADAIARFQELLQVYGGNQGWCFIEEAYYKLLMEALLSKQQGSAEYKKIPLKMCPRRPGDATAVYASTDKAEKELGWKAKYGIEEMCRDLWNWTSKNPWGYQGKH*






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