Glyma18g44270 - SoyBase

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Report for Sequence Feature Glyma18g44270

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53964330
stop:	53967065
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51710	AT	Annotation by Michelle Graham. TAIR10: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain \| chr3:19182484-19183996 FORWARD LENGTH=476	SoyBase	E_val: 3.00E-162	ISS
GO:0048544	GO-bp	Annotation by Michelle Graham. GO Biological Process: recognition of pollen	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF81	Panther	SERINE/THREONINE KINASE-RELATED	JGI		ISS
PF01453	PFAM	D-mannose binding lectin	JGI		ISS
UniRef100_G7KX20	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Epidermis-specific secreted glycoprotein EP1 n=1 Tax=Medicago truncatula RepID=G7KX20_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N359	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N359_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44270

Paralog	Evidence	Comments
Glyma09g41480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma19g28861	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g210600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44270

Limit To All Plant Sequences

>Glyma18g44270.1   sequence type=CDS   gene model=Glyma18g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTGTTGCTGCTGCCACTCATGAGGCTTTTCCCTTTCCTTCTCCTCCTCCTCCTTGTTCTCTTGTTCAATTATGGCTTTTCCGAGTCAGGTGTTGGTGCTGGCTACCAACTCATGGTAGCAGTTCCTGTGGAGTATGAAGTGGATTTCAAAGGGAGGGCTTTTCTTGTGGAGACCAATCAGACAGCTCCGAATTTCAGAGTGGCATTGAGCATTGAGGCCATCAATGGGAAATACTCATGCTCATTGGAAGTTTTCCTTGGGGATGTGAAGGTGTGGGATTCTGGCCATTACTCCAGGTTTTACATCACTGAGAAATGCTTGCTAGAACTCACTATGGATGGAGATTTAAGGCTGAAAGGTCCAAAAGAAAGAGTGGGATGGAAGACTGGGACTTCTGGACAAGGTGTGAAGAGATTGGAAATACAGAGGACCGGCAATCTGGTGCTTATAGATGCACTGAACAATATAAAGTGGCAGAGTTTCAATTTCCCAACGAATGTGATGCTTAGGGGTCAGCAACTTGATGTGGCAACTCGCTTGACGTCTTCCCAAAGCAACTCAAGTTTGTTCTACTACTCTTTCGAAATTGAGGACAAGAAGGTTGCATTGTACTTGAACTATGGTAAGTTGAGATATTCTTACTGGGGGTTTCAGCCTACCATGAATAGAAGTATTACATACATTAAGCTGAGTTCAAGAGGGTTGGTGTTGTTTGATGTCAAATACAAGAAAATAGCACAAATTCCATCGGAGGGGATTCATCCACTAAGGTTTCTAGCACTAAATAATGAAACGGGAAAACTTGGTCTTTACTACTATTCACCCGAGAAAGGAAAGTTTGAGGCTTCTTTTCAAGCACTTAACAGCACATGTGATCTTCCAATTGCTTGTAGGCCTTATGGGATATGCACATTCTCCAATTCTTGTTCATGTATTCAGCTTTTGACAAATGAAGACAAAGGCGGTGCTGATTGCGGTTGGGCAATTTCGGGAGGGTTTTGCAACGGTAAGGAGGCGGAAATGCTAGAACTAGATAATGTAAGTAGTGTGCTTAAAAATGTTACTAAGGTGGTAAATATTACCAAAAAAGCATGTGAGAATTTGTGCTTCCAGGACTGTAAATGTGCTGCTGCTTTGTATTTTGGGAATGCTAGCACAGATGAGGCAGAATGTTATCTTTACAAACTTGTGCTGGGTCTCAAACAGGTAGAAAAAGGCACAGGATTTAGTTATATGGTTAAGGTCCCAAAGGGAACTGTTAAAAACCATGAGAGGCATAATGTGAAAAGATGGGTGTTTGTTGTGGCTGGAGGGGTTGATGGACTCATTATTCTACTTCTTGTTGGAGGGTTTGGATATTGGTTGGTTAAAAGGAGAAGTCATGCCTTGCATTCTCGGGCCAGCACTACATGA

Predicted protein sequences of Glyma18g44270

Limit To All Plant Sequences

>Glyma18g44270.1   sequence type=predicted peptide   gene model=Glyma18g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLLLPLMRLFPFLLLLLLVLLFNYGFSESGVGAGYQLMVAVPVEYEVDFKGRAFLVETNQTAPNFRVALSIEAINGKYSCSLEVFLGDVKVWDSGHYSRFYITEKCLLELTMDGDLRLKGPKERVGWKTGTSGQGVKRLEIQRTGNLVLIDALNNIKWQSFNFPTNVMLRGQQLDVATRLTSSQSNSSLFYYSFEIEDKKVALYLNYGKLRYSYWGFQPTMNRSITYIKLSSRGLVLFDVKYKKIAQIPSEGIHPLRFLALNNETGKLGLYYYSPEKGKFEASFQALNSTCDLPIACRPYGICTFSNSCSCIQLLTNEDKGGADCGWAISGGFCNGKEAEMLELDNVSSVLKNVTKVVNITKKACENLCFQDCKCAAALYFGNASTDEAECYLYKLVLGLKQVEKGTGFSYMVKVPKGTVKNHERHNVKRWVFVVAGGVDGLIILLLVGGFGYWLVKRRSHALHSRASTT*

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