Glyma18g44180 - SoyBase

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Report for Sequence Feature Glyma18g44180

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53863569
stop:	53869108
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38410	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS/GAT family protein \| chr2:16086912-16090047 REVERSE LENGTH=671	SoyBase	E_val: 3.00E-148	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005795	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG1087	KOG	Cytosolic sorting protein GGA2/TOM1	JGI		ISS
PTHR13856	Panther	VHS DOMAIN CONTAINING PROTEIN FAMILY	JGI		ISS
PTHR13856:SF27	Panther	TARGET OF MYB1 RELATED (TOM1 - RELATED)	JGI		ISS
PF00790	PFAM	VHS domain	JGI		ISS
PF03127	PFAM	GAT domain	JGI		ISS
UniRef100_G7KW31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Class E vacuolar protein-sorting machinery protein HSE1 n=1 Tax=Medicago truncatula RepID=G7KW31_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E843	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E843 related cluster n=1 Tax=unknown RepID=UPI000233E843	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44180

Paralog	Evidence	Comments
Glyma09g41520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g210100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44180

Limit To All Plant Sequences

>Glyma18g44180.2   sequence type=CDS   gene model=Glyma18g44180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCTGCTTCTTCTTCTTCAGCTACTGTCGCAGTGGAGAAGGCGACCAGCGACCTTCTTATGGGCCCTGATTGGACCATGAACATCGAAATTTGTGATTCCATCAATTCTAATCATTGGCAGCCAAAAGATGTGGTAAAAGCTGTGAAGAAGAGATTACAACATAGGAGCTCTAGAGTTCAATTACTTGCTCTCACGCTTCTGGAGACAATGGTAAAGAACTGTGGTGATTATGTGCACTTTCAAATTGCTGAGAGGAACATACTGGAGGAGATGATCAAAATCGTAAGGAAGAAGGCAGATATGCAAGTGAGGGATAAAATTTTGATATTGCTGGACTCTTGGCAAGAGGCATTTGGGGGACCAGGTGGTAAACATCCTCAGTACTATTGGGCATATGAGGAGTTAAAGCGATCTGGAGTAGTTTTCCCAAAGCGTTCACCAGATGCAGCTCCAATATTTACTCCTCCTCCTACCCATCCAAATTTAAGAAATATGCAAGCTGGATATGGGATGCCAAGCAATTCATCAAAAACACTTGATGAAACCATGGCAACAGAGATAGAAAGTCTAAGTTTGTCAAGCTTGGAGTCCATGCGTCACGTTTTGGACCTTTTGAGTGACATGTTACAAGCTGTGAATCCCGGTGATCATGCAGCTGTAAAAGACGAAGTTATTATTGATCTTGTTGACCGCTGTCGCACAAACCAGAAAAAATTGATGCAGATGCTAACAACTACTGGGGATGAGGAGCTTCTTGGACGAGGCCTCGAATTAAATGATAGTATTCAAAGTTTGCTTGCAAGGCATGATGCAATTGCTTCTGGTACTCCGTTTTCAATTCAAGGAGCAAGTTCCAGTACTGTGTCAACTGAAGTTCACTCTAGTGTTGATCAATCCACTGTAAAGAGCTCCAGCCCTGGAGAGTCTTCTTCAACACCTAAAGCTAGCCCTTCAGCCATAGTCTTTTCTGAATCCAAGAGCCAGAGTGATGAAGAGGAAGAAGATGAATTTGCGCAGTTAGCTCGGAGGCATTCTAAGGCACAATCAGTGACTTCAAAAGATGCTACAACTGGATCCAGTGAAACTTCAGGGTCAATGAAAAGTGGCAGCACAGCTCCACATGTGCCAAACCCCTCAACCTCAGTCCCATCCAATGCCTTAGTTCTTTCCAACCCACCTGAACCAGTTAGTACCACAAAGGATCAGGACATTATTGACTTACTCAGTATCACTTTGTCAATGTCACCATCTCCACAGACAAGTTATGCACCACCTCCACAGACAAGTTATGCACCACCTCCACAGACAACATATGCACCTTCAGCATCTAGCCAAGGCATGCATCAGACACCTGCTCCATCCAGAACAGAAGGGTTTTCTTATGCTTCCCAAACATATCCGGGAAACTTGTCATACAACAGTTATGTTGTTCCTTGGGCTCAATCTCAATCGAAGTCGGATCTTCAAACCCAGCCTCAGCAACAGACATATCAATCCCAATCCCAACCCCCAACCCCAACCTCAACTCGACAATTACATCCGCATTATGAATCTGAACAAGCTCATCATCATCAACCGACCCAACAGGTAAGGTCCCAGCCCCAGTCCGAACAATTGCAATCACAACCCCTGCCACAATCCCCACGTGTATTGCAACAACCTCAAAATCCTCAATATAGCCCTCCTCAACAACAATCACAACCTCAATATAGCCCTCCTCAACAACATATGCAACCTCATAATGAACCGCAACCACTACAGTATCAGCCCCAGCACCAAACGCTGCAATCTCAGCCTCAGCCCCAACCCGGACACATTCAACAACCTCAACCGCAGCCACAATTTCAGAATCAACATTTTCAATACCCTGCAAGATATCCTCCCCCACCATGGGCCGCTACACCTGGATATGCCAACTATCAAAACCACTCACCTGCTACAAACATGATCTCAGCTCCTCCAGCCAACACTGCGACATCTTATTCATCTGCACCCGGGGTTAGGCCCGTGCAACACAATAACTCATTCCATTCCAGAGGTACTGGTGGAACTCCTGCAAGTGCAACTGGACAAAAGCCTTTTGTTCCGTCGTACAGGTTATTTGAAGATTTGAACGTTTTTGGAAACACGGATGGAAGGGTAAAGATGACCAGTAGTGGCTCGTCATCCAGCTTGTCAGGGTCAATGGGACCTGGTATGGTTGGGGGGCGTAAGTGA

Predicted protein sequences of Glyma18g44180

Limit To All Plant Sequences

>Glyma18g44180.2   sequence type=predicted peptide   gene model=Glyma18g44180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMAASSSSATVAVEKATSDLLMGPDWTMNIEICDSINSNHWQPKDVVKAVKKRLQHRSSRVQLLALTLLETMVKNCGDYVHFQIAERNILEEMIKIVRKKADMQVRDKILILLDSWQEAFGGPGGKHPQYYWAYEELKRSGVVFPKRSPDAAPIFTPPPTHPNLRNMQAGYGMPSNSSKTLDETMATEIESLSLSSLESMRHVLDLLSDMLQAVNPGDHAAVKDEVIIDLVDRCRTNQKKLMQMLTTTGDEELLGRGLELNDSIQSLLARHDAIASGTPFSIQGASSSTVSTEVHSSVDQSTVKSSSPGESSSTPKASPSAIVFSESKSQSDEEEEDEFAQLARRHSKAQSVTSKDATTGSSETSGSMKSGSTAPHVPNPSTSVPSNALVLSNPPEPVSTTKDQDIIDLLSITLSMSPSPQTSYAPPPQTSYAPPPQTTYAPSASSQGMHQTPAPSRTEGFSYASQTYPGNLSYNSYVVPWAQSQSKSDLQTQPQQQTYQSQSQPPTPTSTRQLHPHYESEQAHHHQPTQQVRSQPQSEQLQSQPLPQSPRVLQQPQNPQYSPPQQQSQPQYSPPQQHMQPHNEPQPLQYQPQHQTLQSQPQPQPGHIQQPQPQPQFQNQHFQYPARYPPPPWAATPGYANYQNHSPATNMISAPPANTATSYSSAPGVRPVQHNNSFHSRGTGGTPASATGQKPFVPSYRLFEDLNVFGNTDGRVKMTSSGSSSSLSGSMGPGMVGGRK*

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