Glyma18g44100 - SoyBase

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Report for Sequence Feature Glyma18g44100

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53726518
stop:	53744804
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08840	AT	Annotation by Michelle Graham. TAIR10: D-alanine--D-alanine ligase family \| chr3:2679648-2686157 REVERSE LENGTH=937	SoyBase	E_val: 0	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008716	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-alanine-D-alanine ligase activity	SoyBase	N/A	ISS
GO:0016874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ligase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR23132	Panther	D-ALANINE--D-ALANINE LIGASE	JGI		ISS
PF01820	PFAM	D-ala D-ala ligase N-terminus	JGI		ISS
PF07478	PFAM	D-ala D-ala ligase C-terminus	JGI		ISS
UniRef100_G7KW01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: D-alanine--D-alanine ligase n=1 Tax=Medicago truncatula RepID=G7KW01_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E841	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E841 related cluster n=1 Tax=unknown RepID=UPI000233E841	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44100

Paralog	Evidence	Comments
Glyma09g41600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g209600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44100

Limit To All Plant Sequences

>Glyma18g44100.1   sequence type=CDS   gene model=Glyma18g44100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGTCATCACTTGCCGGCAACTGCACCCTTCTCCGCCACAGCGAGACTCAATCCTGCTCGCTGTTGTCCTCGCCCGGAGGTAGTTCTGTTAAGCTCTTCTGGTCGAAGAAGCACGAGGCCAGCACGTGCCATGCTGCACGTGTCGCTGCCGTGCCACGTGCTTCCGCGCGTGAGGTGGCGGTGGTTGGTGGTGGAGTGGTTGAGAAGGGGAGGGAGAAAGGGAGGGTGCTGAAGGTGGGCCTCATATGTGGAGGTCCTTCTGCTGAGCGTGGGATTTCCCTCAATTCTGCTAGATCAGTTCTTGATCACCTGCAGGGGGATGATTTACACGTGAGTTGCTATTACATTGATTGCAATCTCAATGCATTTGCAATTTCTTCAGCTCAGGTATATTCCAACACCCCTGCTGATTTTGATTTTAAACTTGAAAGCCTTGCCCAAAGTTTCCAGACTTTGTCTGATTTAGCAAAGCATCTAGCTACAGCTGTGGACATAGTATTTCCAGTTATACACGGTCAATTTGGTGAAGATGGTGGCATTCAGGAATTGCTGGAAAAGTATAATGTTCCATTTGTTGGCACAGGATCAAAGGAGTGCTGCCAAGCATTTGACAAGCATAAAGCATCATTGGAGCTCAGGAAGCATGGATTCATAACAGTACCCAGTTTCTTAGTTCAGGGGTATGAAACAAAGAAATCAGAACTATCAGAATGGTTTGAAAAGCACCAGCTGGACCCTGACTTAGGGAAAGTTGTGGTAAAACCAACAAGAGGAGGGTCAAGCATTGGTGTTAGAGTTGCATATGGTGTGAATGATTCTCTTGTAAAAGCCAATGAAATTATGTCTGAGGGAATCGACAATAAAGTGCTAATAGAAATATATCTTGAAGGTGGGAGTGAGTTTACAGCCATTGTCCTTGATGTAGGATCTGCTTCAGATAGTTTTCCTGTTGTACTACTTCCGACTGAGGTGGAGCTTCAATTCCGTGGTGCAAATGATGTGAAAGAAAATGACGCAATATTTAATTACCGCAGGAAGTACCTTCCAACCCAACAGGTTGCTTATCACACTCCACCACGGTTTCCTTTGGATGTAATTGAAAATATTCGCAAAGGAGCATCTCTGATATTTCAACAGCTTTGCCTGCAAGATTTTGCACGAATTGATGGATGGTTTTTGCCAAATTCAAGTTCCAAATTGTCACCATCACCAGAAAGTGAGTTTGGAAGGACTGAATCTGGTACCATAATATTCACTGACATTAACCTGATAAGTGGTATGGAACAAACCAGTTTTCTATTTCAGCAAGCTTCTAAGGTTGGTTTTTCTCATACAAACATCCTTAGAAGCATTATTCACCATGCTTGCTTGCGATTTCCAAATCTTGCTTCAGTTAGTGGTATATCAGGTCAGCTTCCAAGCAGGTCAAAATCCTTACAACAAAGCAAGTCATTTTCTCGCCATGAAGGAACTCGAAAAGTGTTTGTCATTTTTGGAGGTAACACATCAGAACGGCAAGTATCTCTTATGAGTGGTACAAATGTCTGGCTCAATTTGCTAGCCTTCCATGATCTTGAGGTAACTCCATGTTTGCTTTCCCCTACAAGTGAGTGTGCATCTAGCGTTGATATCGGAAAAAAGGCTGATGATGTAATGAATAGAACAGTTTTGTCATTACCTTATTCTCTTGTGCTAAGACATACTACTGAGGAGGTACTGGATGCATGCATGGAAGCAATTGAGCCAGAACGGGCTGCAATAACATCTGACCTACGGAAGAAAGTAATGAACGATCTTATGGAGGGTTTGAAGGACCACAATTGGTTTACTGGGTTTGATATTGCTGATGATCTGCCTGCAAAATTTTCGTTAAGGCAGTGGATCAAGCTAGCCAAGGAAGTCCAAGCAACAATTTTTATTGCAGTGCATGGAGGCATTGGAGAAGATGGTACACTTCAATCTTTGCTGGATGCTGAAGGAGTTCCCTACACAGGTCCTGGTGCAATGGCATCGAAGATTTGTATGGACAAAGTTGCAACATCTGTGGCTATAAAACATCTTGCAAATTCGGGAGTTCTTACCATAAATAAGAATGTCAGGCAAAAAGATGATCTCTCTAATAAGCCCATAAGTGATACATGGCATGACCTCACCAGGAAGCTACAGTGCCAAACATTATGTGTCAAACCAGCAAAAGATGGATGCTCAACTGGGGTCGCAAGACTATGCTGTTCTGAGGACCTTGCAATATATGTCAGAGCTCTGGAGGACTGTCTACTAAGAATTCCTCCAAATAGCTTATCAAAGGCACATGGTATGATTGAGATGCCAAACCCTCCTCCAGAATACTTAATTTTTGAACCTTTCATAGAGACGGATGAAATAATTGTGACATCCAAATTTGAGGATGCAACTGGCCATGGCCTCACGTGGAAAGGGCACAGCAGATGGGTAGAAATAACTGTTGGCGTCATAGGAAAACGTGGATCAATGCACTCGCTAAGTCCTAGTGTAACTGTCAAGGAATCTGGTGATATTTTGTCACTTGAGGAGAAGTTCCAAGGTGGGACTGGCATCAATCTGACTCCGCCTCCCTTGTCAATTATGAGTGAGAATGCTTTGAAGAGATGTAAACAGCACATTGAACTGATTGCAAACACTCTACAATTGGAAGGATTTTCACGTATTGATGCATTTGTAAATGTTGACAGTGGAGAGGTTTTGATTATAGAGGTAAATACTGTGCCTGGAATGACACCTTCCACTGTTCTGATTCATCAGGCACTAGTAGAACAGCCACCGTTGTATCCTCATCAGTTCTTCCGTAAGCTTCTTGATTTGGCATCTGAAAGGTCCATGTAA

Predicted protein sequences of Glyma18g44100

Limit To All Plant Sequences

>Glyma18g44100.1   sequence type=predicted peptide   gene model=Glyma18g44100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSSLAGNCTLLRHSETQSCSLLSSPGGSSVKLFWSKKHEASTCHAARVAAVPRASAREVAVVGGGVVEKGREKGRVLKVGLICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAFAISSAQVYSNTPADFDFKLESLAQSFQTLSDLAKHLATAVDIVFPVIHGQFGEDGGIQELLEKYNVPFVGTGSKECCQAFDKHKASLELRKHGFITVPSFLVQGYETKKSELSEWFEKHQLDPDLGKVVVKPTRGGSSIGVRVAYGVNDSLVKANEIMSEGIDNKVLIEIYLEGGSEFTAIVLDVGSASDSFPVVLLPTEVELQFRGANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASLIFQQLCLQDFARIDGWFLPNSSSKLSPSPESEFGRTESGTIIFTDINLISGMEQTSFLFQQASKVGFSHTNILRSIIHHACLRFPNLASVSGISGQLPSRSKSLQQSKSFSRHEGTRKVFVIFGGNTSERQVSLMSGTNVWLNLLAFHDLEVTPCLLSPTSECASSVDIGKKADDVMNRTVLSLPYSLVLRHTTEEVLDACMEAIEPERAAITSDLRKKVMNDLMEGLKDHNWFTGFDIADDLPAKFSLRQWIKLAKEVQATIFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVAIKHLANSGVLTINKNVRQKDDLSNKPISDTWHDLTRKLQCQTLCVKPAKDGCSTGVARLCCSEDLAIYVRALEDCLLRIPPNSLSKAHGMIEMPNPPPEYLIFEPFIETDEIIVTSKFEDATGHGLTWKGHSRWVEITVGVIGKRGSMHSLSPSVTVKESGDILSLEEKFQGGTGINLTPPPLSIMSENALKRCKQHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALVEQPPLYPHQFFRKLLDLASERSM*

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