Glyma18g44060 - SoyBase

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Report for Sequence Feature Glyma18g44060

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53665969
stop:	53667588
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51680	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr3:19173622-19174667 REVERSE LENGTH=303	SoyBase	E_val: 2.00E-134	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0725	KOG	Reductases with broad range of substrate specificities	JGI		ISS
PTHR24322	Panther	FAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_G7KV46	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sex determination protein tasselseed-2 n=1 Tax=Medicago truncatula RepID=G7KV46_MEDTR	SoyBase	E_val: 9.00E-172	ISS
UniRef100_I1N346	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1N346_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44060

Paralog	Evidence	Comments
Glyma09g41620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g209200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44060

Limit To All Plant Sequences

>Glyma18g44060.2   sequence type=CDS   gene model=Glyma18g44060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGTAATGTCTGAGAAACCTCTTCAGGGAGTTCCTCCACAGATAACAGACACCACTTTTTCCTCTTCATCTAAAAGGTTGGAAGGCAAAGTTGCTATAGTAACTGGGGGTGCCAAGGGCATAGGTGAAGCAACCGTGAGAGTTTTTGTGAAGCATGGTGCAAAGGTGATGATTGCTGATGTTGAGGATGCAGCTGGGGCCATGCTTGCAGAGACACTATCTCCTTCAGCAACCTATGTCCACTGTGATGTTAGCATTGAAAAAGAGGTAGAAAAATTGGTCAGTTCCACCATCTCTCGCTATGGACACCTTGACATCATGTTCAACAATGCTGGGGTGCTAGGGAACCAGTCCAAGAACAAGAGCATTGTCAACTTTGACCCTGATGAGTTTGACAAGGTGATGTGTGTGAATGTAAAGGGTGTGGCCTTAGGGATCAAACATGCTGCAAGGGTGATGATTCCAAGAGGAATTGGGTGCATTATCTCAACTTCTAGTGTTGCTGGGGTCATGGGGGGGCTTGGACCACATGCCTACACTGCCTCAAAGCATGCCATAGTTGGGATTACCAAAAACACTGCTTGTGAGTTGGGGAGATATGGGATTAGGGTCAATTGCATTTCACCATTTGGGGTGGCCACTTCCATGCTTGTGAATGCATGGAGGCCTTGCGATGATGAGGGCACCAATTTTGGGGTGCCATTCCCAGAGGAGGTTGAGAAGATTGAGGAGTTTGTTAGAGGGCTTGCCAACTTGAGAGGACCAACTTTGAGGGCTTTGGACATTGCTGAGGCTGCACTTTATCTTGCTAGTGATGAATCCAAGTATGTTAGTGGCCATAACCTTGTTGTGGATGGTGGAGTTACTTCCTCAAGAAATTGTATTGGACTGTAA

Predicted protein sequences of Glyma18g44060

Limit To All Plant Sequences

>Glyma18g44060.2   sequence type=predicted peptide   gene model=Glyma18g44060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVMSEKPLQGVPPQITDTTFSSSSKRLEGKVAIVTGGAKGIGEATVRVFVKHGAKVMIADVEDAAGAMLAETLSPSATYVHCDVSIEKEVEKLVSSTISRYGHLDIMFNNAGVLGNQSKNKSIVNFDPDEFDKVMCVNVKGVALGIKHAARVMIPRGIGCIISTSSVAGVMGGLGPHAYTASKHAIVGITKNTACELGRYGIRVNCISPFGVATSMLVNAWRPCDDEGTNFGVPFPEEVEKIEEFVRGLANLRGPTLRALDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL*

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