SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38440 | AT | Annotation by Michelle Graham. TAIR10: SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 | SoyBase | E_val: 2.00E-111 | ISS |
| GO:0000003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reproduction | SoyBase | N/A | ISS |
| GO:0003002 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regionalization | SoyBase | N/A | ISS |
| GO:0006325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin organization | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome branching | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0033043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0048589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental growth | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0051127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of actin nucleation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031209 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCAR complex | SoyBase | N/A | ISS |
| GO:0003779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR12902 | Panther | WASP-1 | JGI | ISS | |
| UniRef100_G7KV36 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein SCAR2 n=1 Tax=Medicago truncatula RepID=G7KV36_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E83F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E83F related cluster n=1 Tax=unknown RepID=UPI000233E83F | SoyBase | E_val: 0 | ISS |
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Glyma18g44053 not represented in the dataset |
Glyma18g44053 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g41630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g209100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g44053.1 sequence type=CDS gene model=Glyma18g44053 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGCTCTGTAGACACCACATTCGGAGCGCGCACGCTCTTGCGGATCCGGAGCTGCGCCGCGCCGCCGATATCGACGACTCCGAAGCTCTTCTCGAAGCCGTCGCAATGTCCGGACTCGTCGGCTTTCTCCGCCAGCTCGGCGACCTCGCTCAGTTTGCTGCTGAGATGTTCCATGACTTACATGAAGAAGTACTGGCTACTGCTGCAAGAGGCCACAATCTTGTGTCTCGTGTTCAACAGCTTGAGGCTGAAGTTCCAGCACTAGAGAAAGTTTTTTTGTCACAAACTCATCATTCATCATTTTTTACAAAAGGAGGGATTGAATGGCATCCTAATCTTCGGTCTGAACAGAATCTTGTTACACGCGGAGACTTACCTCGATTTATAATGGATTCATATGAAGAGTGCCGTGGACCTCCAAGATTGTTCCTTCTGGACAAGTTTGATGTGGCGGGGGCTGGGGCATGTCTGAAGCGTTATACTGATCCGTCGTTCTTTATAGTGGAGTCTGCTTCCTCTGGAAAAGTAACAGTAGAAGTTCAAAGGGAAAAGAAAATTCATAAAGTTAAGCAAAAGAAAGGAACACGACTGCGGAATGGTGAAACCCCTGAAGTTGTACCGTCACATGCAAAACTGCATCAGTTACTTCTTCAGGAGCGCATTGAGAATGCTTGTGGGGATCCTGCTCGCCTTGTGAAGTTGAAAAAGAAACAATTGAATGGATCTGCAGTTGAAGCAAAAACATGGAAAAGTTACATGGAGAAAATTCTGGAAATCCCCTCCCCTGATCATAAAATGGTTTGTGAAACTTCAATTCCACAGCCCGGGAAGTTGGTGTCAGATGATTCTAGTGAAAGTGGGATTAAAATACTTGAAATCAGTAGCATTACTCCTATGAATAGGTCTTTGGGAAATGAAAACACATGGTCATCACCAAATGAGCAGGAACTAGAAGTGAATTCATACGCAGAAATGGATAGGGAGATGGATGGATATATTGTGGAGGTGAATGAACAAATCTCTGGTGGTGTCACAGAGGAAATGTCTTCTGACTATCTCAAGGTACTCGATGAAGCAGGATTAGTATTTGATGAACAAAATAAAAGAGAATTCAACTTAGATAGCTACCACTCTGATGATGTGATTAGTGAGGTTGATGATTATATGGATGCATTAGCTACCATTGAGTCTGAATTGGATACAGACAATGAGTGTGGACCTACGAAAAAATTATTAAATATTCAAAATTTAACTGATTCAAATGGCAAAGGCGAACCTCAACTGCGAGCTCAATTTTCAGATTCTCAATCATTTGGTGACTCCTTAACTTCTGCTGAAGAAATTAGTTCATTTGAACAAGATAGAAATGGAGAGCATAATGAAGTGCAAGGTCAGCTGTCAGATTCTCTGTCAACAGGGACCTCCTGGGCATCTGATGATAATAGTCCATTCAGAAGAGATATAAGTGAAGAACATTCCCAACTACAACAGTTTTCAGATTTTCAATATATCAGAAACTCCACATCAAGGATTGAAGATATGTCATCTGACCAGCTTCCCCCTACTTTTGAGTTTCAAAGGACTTACTGTCGTGAGTTTGTCGTGGATGATGATGAACATGCTCAGGGTGAAGTGATTTCTGATTCTAGACCAGTCTCTTCTGGTTCATGTCTGATGGATTCTGAACATTTAATGTTGTATAGTGATCTTGGAGCTGCCTCACCAGTGTCCCTATCTGCAGGGACAGGAAGGCAATCAGATGAAACACCCTCCGGCCCTGTTGAGCTTCATTTAAGAATAGAAGATGATGAAGAAAAGAAGTGTCTTGTCGAATCTATAGTGGCCAGATCTGATGCTTGCTACCCAATAAGAGATGATGCTTTCCCAGTGGTTTCTTTTGATAACAATTCTTTGAACAACTTGGATGTCTGTGATCCCTATGTCCATTCCAATGATCTGTTACAAACTTCTAATGAATTAAACTTAGCTCATGAAGGTGAATCTGGTGGTCATTCTGGGATTGAAGTTTTTCAGGCAGAATCTCTTAATGAATGCTCTTCTGAAATATTGGTTAGTGGAGATGTTGGTTTACAAGGGGAGGATCCCATTTGCCCATCTATGGAAGTAGACCTGAATCCAGATACTAAGCTGCTGCTTGATGTCCAAAATTTAAAATCTGAGGATGATATTATAGCTACCCAGCTTAACTCAGAAGATTTGTTTCCTGTTGCAGAGACTACATCAAAGAGCAGCATTACACAGGAGCTATGCTTTGATTTTACAAGTGGAAACAAGCCAGATTTAGCAGAAGTTGAATTTTTGCCTCCTGATCATCAAGTGAATTTTGAAGAGGTACCAAGGATATTGCCTGGTGATGAAATAAGTGGATCCACCTGCAGTTTGGATCTAGTTGAAGATGATGTTCATATTAAACATTCATCTTCAGATATCATATCTTCTCCAATGAGTAATCTTACAAAGTTGGAAGAAACTCTTTCTATTTTTGCAGATCCTTGTGAGAAAGAGATGATAGTCAGTGAGGCAGACAGTAGAGAATCTTTGACAGAATTAGCAGCACAGAAGGTAGTGGATCAACCTGAAATTACTTCTATTGATGTACAGTTGAGCATGAGCAGATCAGTTCCATGCGATCCTTCTGATTCTGGAATTAGGAATAATATGCAACATTCATCTATTAAGGAGAAAATCCATTATAGCTCTTCTATCAATGGCCTGAAAACGGTGCCTGTTTGTTCAGAGCTAGACACGCAAAGGTTATCTGGTCAGGGAATTAATCCAACAAAACGTGTCATGAATCCATTAAAACCCCTAATTCCTGACTTCTTACCCAAGGCATCTAAAAACAGTCTAGAGGAGATGCCACCTATGCCCCCTCTGCCTCCAATGCAATGGAGAACGGGCAAGGTTCAACATGCTTCCCTTTTTACACAGAGAGAAGACATAGAAGTAAACCTAGCCTCACTCCAACCAATACAGCCCAATAAACTTGATGATAAGTCTCAATTTGGTTTACCAACTTCTGAAAAAGAGACCTTGCCGTATCAGAATCTATTTTTGCCTGTCATGGCTGTGGAAAGTAATATCCATCAATATTCTTCTGGGTTTTCAGTGGGAATGTCAGAGCAGCCTGTTTCTATTCCTTTTCAATTTCCTGTAATGGTAAATGAAGCAAATGGTCAATATAATTTCCTAGTTCCAGAACAAAGCCAAATCCAGAACCCTTTCTTAACATTACAGGACAGGTCTCCACTTGGATATGCTGTTGCTTTGGAGGGAGAAATAAATCCAAGTCCATGCCCACCATCACTTCTTGCTGAATGTGTTGTTTCTAGGGCTGATCCCATTTTACAACAAGAAAAACCAACTCAATCTCCTAGTGAATTAACGGAAGGTACCAGCTTAGAAGTTACAAAGGATAGACCTGGAGAATTGCATTTAGTGCTACCTGCAGAATGTCCAGATTCTGGAGATGATCCCATTTCTCCAAAAGAGAAACCAACACAATCTCCAAGTCAGTTAATGGAAGAGACTAGTTTAGAAGTTAAAACTCTTGAGCAGTCTTCGATTAATCTGGAAAGGGAACAAGAAGATCCTTCAACCTCACCCATGTCACCGCCAAGTCTAGAAATTAAGGAGACCAATCACAGCCTGCTACCTTCAGAGGGAGAAATGGCGTTTCCATTGGATACATCTTCTCAAACATCCAAGCGTGATAATACTGAGACGCCAAATGGAAAGCCAAAGAATAAGCGTCCTCTTCCTCAGGAGGATCCTGTAATTGATCCTGTTGCTGCTCTAGACAAAAGCAGGCTGAGGAAGGTCACTGAACGTGTTATGCCCCCCAGAGCACCAAAGGAAGATGGAAGAGAATCACTGTTAGAAATGATAAGATCGAAGTCATTCAACTTGAGGCCTGCTGCGGTTCAACGACCACCCAGGATTCAGGGTCCAAAACGAACTTGA
>Glyma18g44053.1 sequence type=predicted peptide gene model=Glyma18g44053 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPLCRHHIRSAHALADPELRRAADIDDSEALLEAVAMSGLVGFLRQLGDLAQFAAEMFHDLHEEVLATAARGHNLVSRVQQLEAEVPALEKVFLSQTHHSSFFTKGGIEWHPNLRSEQNLVTRGDLPRFIMDSYEECRGPPRLFLLDKFDVAGAGACLKRYTDPSFFIVESASSGKVTVEVQREKKIHKVKQKKGTRLRNGETPEVVPSHAKLHQLLLQERIENACGDPARLVKLKKKQLNGSAVEAKTWKSYMEKILEIPSPDHKMVCETSIPQPGKLVSDDSSESGIKILEISSITPMNRSLGNENTWSSPNEQELEVNSYAEMDREMDGYIVEVNEQISGGVTEEMSSDYLKVLDEAGLVFDEQNKREFNLDSYHSDDVISEVDDYMDALATIESELDTDNECGPTKKLLNIQNLTDSNGKGEPQLRAQFSDSQSFGDSLTSAEEISSFEQDRNGEHNEVQGQLSDSLSTGTSWASDDNSPFRRDISEEHSQLQQFSDFQYIRNSTSRIEDMSSDQLPPTFEFQRTYCREFVVDDDEHAQGEVISDSRPVSSGSCLMDSEHLMLYSDLGAASPVSLSAGTGRQSDETPSGPVELHLRIEDDEEKKCLVESIVARSDACYPIRDDAFPVVSFDNNSLNNLDVCDPYVHSNDLLQTSNELNLAHEGESGGHSGIEVFQAESLNECSSEILVSGDVGLQGEDPICPSMEVDLNPDTKLLLDVQNLKSEDDIIATQLNSEDLFPVAETTSKSSITQELCFDFTSGNKPDLAEVEFLPPDHQVNFEEVPRILPGDEISGSTCSLDLVEDDVHIKHSSSDIISSPMSNLTKLEETLSIFADPCEKEMIVSEADSRESLTELAAQKVVDQPEITSIDVQLSMSRSVPCDPSDSGIRNNMQHSSIKEKIHYSSSINGLKTVPVCSELDTQRLSGQGINPTKRVMNPLKPLIPDFLPKASKNSLEEMPPMPPLPPMQWRTGKVQHASLFTQREDIEVNLASLQPIQPNKLDDKSQFGLPTSEKETLPYQNLFLPVMAVESNIHQYSSGFSVGMSEQPVSIPFQFPVMVNEANGQYNFLVPEQSQIQNPFLTLQDRSPLGYAVALEGEINPSPCPPSLLAECVVSRADPILQQEKPTQSPSELTEGTSLEVTKDRPGELHLVLPAECPDSGDDPISPKEKPTQSPSQLMEETSLEVKTLEQSSINLEREQEDPSTSPMSPPSLEIKETNHSLLPSEGEMAFPLDTSSQTSKRDNTETPNGKPKNKRPLPQEDPVIDPVAALDKSRLRKVTERVMPPRAPKEDGRESLLEMIRSKSFNLRPAAVQRPPRIQGPKRT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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