Glyma18g43940 - SoyBase

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Report for Sequence Feature Glyma18g43940

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53553949
stop:	53557160
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01670	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr5:252000-253856 FORWARD LENGTH=322	SoyBase	E_val: 1.00E-179	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1577	KOG	Aldo/keto reductase family proteins	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF34	Panther	3-CHLOROBENZOATE-3,4-DIOXYGENASE DYHYDROGENASE-RELATED	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_G7KU48	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldose reductase-like protein n=1 Tax=Medicago truncatula RepID=G7KU48_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E83A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E83A related cluster n=1 Tax=unknown RepID=UPI000233E83A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43940

Paralog	Evidence	Comments
Glyma09g41730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g208000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43940

Limit To All Plant Sequences

>Glyma18g43940.1   sequence type=CDS   gene model=Glyma18g43940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAAGTTGTTAAGCCACATGAACCTAAGACACAGTCATTTAAACTTTTGAGTGGTCATACCATACCGGCTGTTGGATTGGGCACATGGAAGTCTGGTTCACAAGCTGCCAATTCTGTGATCACCGCCATTGTTGAGGCTGGTTACAGACACATAGACACTGCTTCGCAGTATGGAGTTCAAGAGGAAGTTGGACATGCACTCCAATCTGCCATGCAAGCAGGAGTGGAAAGGAAGGATCTATTTGTCACCTCCAAACTTTGGTGCACAGACTTGACCCCTGAAAGAGTTAGACCTGCTATCAACAATACTCTTCAAGAACTCCAACTTGACTACCTTGATCTTTACTTGATTCATTGGCCATTTAGATTGAAAGATGGTGCCAGCAGACCCCCCAAAGAAGGAGAAGTGTTGGAGCTTGACATGGAAGGGGTGTGGAGAGAAATGGAGAAGCTTGTCAAGGAAAACCTTGTCAGAGACATTGGAATATGCAATTTCACTCTTACAAAGCTAGATAAGCTGATGAGCATTGCTCAAATTATGCCTTCTGTCTGCCAGATGGAAATGCATCCTGGATGGAGAAATGACAAGATGCTTCAGGCTTGCAAGAAGAATGCCATCCATGTTACTGCTTACTCTCCACTGGGCTCATCAGACGGTGGAAGGGATCTGATCAATGATCAAAAGGTTGATAGGATAGCCAATAAGATGAACAAGAATCCAGGGCAGGTGTTGGTGAAGTGGGCCATCCAGAGAGGGACAAGTGTCATCCCCAAATCAACCAAGCCAGATAGGATCATGGAGAATGTCAGTGTTTTCAATTGGGAACTTCCAGAAAGAGACTTTAAGACCCTTAGCAACATGCCCGATCAGAGGCGAGTTCTGGATGGTGAAGACCTCTTTGTGAACAAGAGCGCTGGGCCATTCAGAAGTGTTGAAGATATTTGGGACCATGAAGATTAG

Predicted protein sequences of Glyma18g43940

Limit To All Plant Sequences

>Glyma18g43940.1   sequence type=predicted peptide   gene model=Glyma18g43940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQVVKPHEPKTQSFKLLSGHTIPAVGLGTWKSGSQAANSVITAIVEAGYRHIDTASQYGVQEEVGHALQSAMQAGVERKDLFVTSKLWCTDLTPERVRPAINNTLQELQLDYLDLYLIHWPFRLKDGASRPPKEGEVLELDMEGVWREMEKLVKENLVRDIGICNFTLTKLDKLMSIAQIMPSVCQMEMHPGWRNDKMLQACKKNAIHVTAYSPLGSSDGGRDLINDQKVDRIANKMNKNPGQVLVKWAIQRGTSVIPKSTKPDRIMENVSVFNWELPERDFKTLSNMPDQRRVLDGEDLFVNKSAGPFRSVEDIWDHED*

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