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Report for Sequence Feature Glyma18g43910

Feature Type:gene_model
Chromosome:Gm18
Start:53533212
stop:53535803
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18020AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr3:6165449-6167515 FORWARD LENGTH=688 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7KU41UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KU41_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E837UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E837 related cluster n=1 Tax=unknown RepID=UPI000233E837 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g207800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g43910.2   sequence type=CDS   gene model=Glyma18g43910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTGCATACAACCTTGGCGCCAATTTTCCACAAACCCAAACTGATTCCCCTCTCCCTTCAATTCTCCACCACCACCACCCTCTCTCCCTCTCTCTCACACCACCATTCCCAAAATGCACACCCCCAACACCAACACCACAACATCGCCACCATCATCCACTCCCTCTGCAACTCTCACCGTTTCTCCGAAGCCCATCATCGCTTTTCCCTCTCCCTCGCCTCGGCCTCCCTCCCCGACGAGCGCACCTGCAACGTCCTCCTCGCGCGCCTGCTCGCCTCTCGCACCCCTCGCGCCACCTGGCGCCTCCTCCGATCCCTCATTGCTTCCAAGCCCGGTTTCGTTCCCTCTCTGGTCAACTACAACCGTCTCATGGACCAGTTTTGCGGTGCCCATTTACCCCGCGACGCCCATAGGCTGTTTTTCGACATGAGGAATCGCGGGCATTGCCCAAATGTTGTTTCTTTCACCACTTTGATTAATGGGTACTGCTCGGTTCGTGCGATGAGGGACGCGCGCAAGGTGTTCGACGAAATGCTTGAGAGCGGCGTGGAGCCGAATTCCGTGACTTACAGTGTTTTGATTGGTGGGGTTCTTCGGGAGAGGGATTTGGAAGGTGGGAGGGAGTTGATGTGTAGGCTGTGGGAGAGGATGAGTGTGGAGGTGGAAGATTCTGTGAAGACTGCTGCGTTTGCGAATTTGGTTGATTCTTTGTGTAGGGAGGGGTTTTTTGGTGAGGTGTTTAGGATTGCTGAGGAGTTGCCGTTTGGGAGTTGTTTTTCTGAGGAGGTTTCTTATGGCCAGATGGTGGATTCGCTTTGCAGAGTTGGGAGGTATAATGGGGCAGCTAGGATTGTTTATCTGGTGAGGAAAAGAGGGTTTGTTCCGAGCGATGTGTCGTATAATCATGTCATTCATGGGCTTAGCAGGGATGGTGATTGTATGAGGGCTTATCAGTTGTTAGAGGAAGGAGCTGAATTTGGGTTCATGTTATCTGAGCATACTTATAAGGTACTAGTGGAAGCTCTTTGCCATGTGATGGATGTGGACAAGGCGAGGGAAGTTTTGAAACTCATGCTAAGGAAGGAAGGTGTGGACAAGACTAGGATTTACAACATTTACTTGAGAGCTCTTTGTTTCGTGAACAATCCCACTGAGCTTTTGAATGTGCTAGTGTTTATGCTTGAGAGCCAATGTCAGGCTGATGTGATCACCCTCAACACTGTGATCAATGGTTTTTGCAAGATGGGTAGGGTTGATGAAGCTTCTAAGGTATTGCATGACATGTTGGCAGGTAAATTTGCTGCACCTGATGTTGTGACCTTCACTACTGTGATTTCTGGTATGTTAGATGCCGCAAGAGTCGATGAAGCTCTTGATCTGTTTCATAAGGTGATGCCAGAAAATGGTTTAAGACCTAGTGTTGTGACATATAATGCTCTTCTCCGAGGGTTATTCAAACTAAAGAGAGTGAGTGATGCATTGATGGCTTTTAATAATATGGTAAGTGAAGGCATTACTGCAGATAGTACCACTTATACAGTTGTGGTAGAAGGGCTATGTGAATCTGACCAAGTAGAAGAGGCAAAGAGTTTTTGGCACAATGTTATATGGCCTTCAGGGGTTCATGATAATTTTGTTTATGCAGCAATTCTGAAAGGGCTGTGCCACTCCGGCAAACTTAATGAGGCTTGTCATTTCTTGTATGAATTGGTCGATTCCGGGATCTCTCCAAATATATTTAGTTATAATATTTTGATCAACTGTGCGTGCAATCTTGGCTTGAAAATAGAAGCTTACCAAATTGTTAGGGAGATGAAAAAGAATGGGCTGACTCCTGATTCTGTGACATGGAGAATTCTTGACAAGTTACATGGCAAAGTGAGGAAGGACATCCATTCTGAAGATCCAACCATGTCAACAACTTATGAGGGACATGACATGGAATAA

>Glyma18g43910.2   sequence type=predicted peptide   gene model=Glyma18g43910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLHTTLAPIFHKPKLIPLSLQFSTTTTLSPSLSHHHSQNAHPQHQHHNIATIIHSLCNSHRFSEAHHRFSLSLASASLPDERTCNVLLARLLASRTPRATWRLLRSLIASKPGFVPSLVNYNRLMDQFCGAHLPRDAHRLFFDMRNRGHCPNVVSFTTLINGYCSVRAMRDARKVFDEMLESGVEPNSVTYSVLIGGVLRERDLEGGRELMCRLWERMSVEVEDSVKTAAFANLVDSLCREGFFGEVFRIAEELPFGSCFSEEVSYGQMVDSLCRVGRYNGAARIVYLVRKRGFVPSDVSYNHVIHGLSRDGDCMRAYQLLEEGAEFGFMLSEHTYKVLVEALCHVMDVDKAREVLKLMLRKEGVDKTRIYNIYLRALCFVNNPTELLNVLVFMLESQCQADVITLNTVINGFCKMGRVDEASKVLHDMLAGKFAAPDVVTFTTVISGMLDAARVDEALDLFHKVMPENGLRPSVVTYNALLRGLFKLKRVSDALMAFNNMVSEGITADSTTYTVVVEGLCESDQVEEAKSFWHNVIWPSGVHDNFVYAAILKGLCHSGKLNEACHFLYELVDSGISPNIFSYNILINCACNLGLKIEAYQIVREMKKNGLTPDSVTWRILDKLHGKVRKDIHSEDPTMSTTYEGHDME*







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