Glyma18g43900 - SoyBase

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Report for Sequence Feature Glyma18g43900

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53530321
stop:	53531366
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55210	AT	Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein \| chr1:20598057-20598620 REVERSE LENGTH=187	SoyBase	E_val: 7.00E-68	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009807	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignan biosynthetic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21495	Panther	NUCLEOPORIN-RELATED	JGI		ISS
PF03018	PFAM	Dirigent-like protein	JGI		ISS
UniRef100_C6SWG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWG8_SOYBN	SoyBase	E_val: 2.00E-139	ISS
UniRef100_G7KU38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance response protein n=1 Tax=Medicago truncatula RepID=G7KU38_MEDTR	SoyBase	E_val: 4.00E-88	ISS

Expression Patterns of Glyma18g43900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43900

Paralog	Evidence	Comments
Glyma07g19360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g207700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43900

Limit To All Plant Sequences

>Glyma18g43900.1   sequence type=CDS   gene model=Glyma18g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCATCCAATTCCTCATCTTTTCCCTCCTCTTCACTCCCTTCACGATCATCTCCACCATAGCCCATGACACCGATGATTTTGTGCGCACATTAGACCGCAAAATGTTGGGTTTGGACGAAAAGAAAGAAAAGTTCATCCATTTCAGGTTCTACTGGCATGACGCGATGAGTGGACGCAACCCTTCTTCAGTTGAAGTTGTGCCACCACCTTTGAAGAACTCAACCACGCGCTTTGGATTGGTGAACATGCTCGATAACCCTTTGACTTTGGGACCTCAATTGAACTCCAAGTTGGTGGGGCAAGCACAAGGGTTCTATGCTTCTACGTCACAAAGTGAGTTTGTTTTGCTCATGGCTATGAATCTTGTCATCACCGAAGGAAAGTACAATGGCAGCACCATCACTATTTTGGGGAGAAACCCTATTTACTATGAGGAGAGGGAGATGCCCGTGATTGGTGGAAGTGGCCTCTTTCGATTTGCTAGGGGATATGCTAAACTTAGAACTTACTGGTTCTCACCCTCCACCAGAGATGCCATTGTTGAGTACAATGTCTATGTTTTGCATTATTATTGA

Predicted protein sequences of Glyma18g43900

Limit To All Plant Sequences

>Glyma18g43900.1   sequence type=predicted peptide   gene model=Glyma18g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFIQFLIFSLLFTPFTIISTIAHDTDDFVRTLDRKMLGLDEKKEKFIHFRFYWHDAMSGRNPSSVEVVPPPLKNSTTRFGLVNMLDNPLTLGPQLNSKLVGQAQGFYASTSQSEFVLLMAMNLVITEGKYNGSTITILGRNPIYYEEREMPVIGGSGLFRFARGYAKLRTYWFSPSTRDAIVEYNVYVLHYY*

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