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Report for Sequence Feature Glyma18g43830

Feature Type:gene_model
Chromosome:Gm18
Start:53406127
stop:53408832
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51660AT Annotation by Michelle Graham. TAIR10: Tautomerase/MIF superfamily protein | chr3:19164229-19165076 REVERSE LENGTH=112 SoyBaseE_val: 4.00E-46ISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0006954GO-bp Annotation by Michelle Graham. GO Biological Process: inflammatory response SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1759 KOG Macrophage migration inhibitory factor JGI ISS
PTHR11954Panther MACROPHAGE MIGRATION INHIBITORY FACTOR RELATED JGI ISS
PTHR11954:SF3Panther MACROPHAGE MIGRATION INHIBITORY FACTOR-RELATED JGI ISS
PF01187PFAM Macrophage migration inhibitory factor (MIF) JGI ISS
UniRef100_G7KTA5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Macrophage migration inhibitory factor-like protein n=1 Tax=Medicago truncatula RepID=G7KTA5_MEDTR SoyBaseE_val: 9.00E-64ISS
UniRef100_UPI000233F40EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F40E related cluster n=1 Tax=unknown RepID=UPI000233F40E SoyBaseE_val: 3.00E-74ISS

Expression Patterns of Glyma18g43830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g43830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g207400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g43830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g43830
>Glyma18g43830.1   sequence type=CDS   gene model=Glyma18g43830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTGCCTTTACATCACCACCAACCTTAACCTAGATGGAGTTGACACCAACCCCGTCTTTTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGTTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACAAGGAACCAGCAGCATATGCTGAGATAGTTTCAATGGGTGGCATAAATACAGAAGTGAAGAGGAAGCTGATTGCTACCATTGGAACCATTTTGCAGTCCAACCTGTCTATCCCAAGAACACGATTTTTCCTCAAAGTCTTTGATGTGAGTGCGTTTCGTACCAACTCCAAAATGTAA
Predicted protein sequences of Glyma18g43830
>Glyma18g43830.1   sequence type=predicted peptide   gene model=Glyma18g43830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPCLYITTNLNLDGVDTNPVFSEATTAVSTIIGKPEKFVMVILKSSVPISFEGNKEPAAYAEIVSMGGINTEVKRKLIATIGTILQSNLSIPRTRFFLKVFDVSAFRTNSKM*






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