Glyma18g43830 - SoyBase

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Report for Sequence Feature Glyma18g43830

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53406127
stop:	53408832
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51660	AT	Annotation by Michelle Graham. TAIR10: Tautomerase/MIF superfamily protein \| chr3:19164229-19165076 REVERSE LENGTH=112	SoyBase	E_val: 4.00E-46	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0006954	GO-bp	Annotation by Michelle Graham. GO Biological Process: inflammatory response	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1759	KOG	Macrophage migration inhibitory factor	JGI		ISS
PTHR11954	Panther	MACROPHAGE MIGRATION INHIBITORY FACTOR RELATED	JGI		ISS
PTHR11954:SF3	Panther	MACROPHAGE MIGRATION INHIBITORY FACTOR-RELATED	JGI		ISS
PF01187	PFAM	Macrophage migration inhibitory factor (MIF)	JGI		ISS
UniRef100_G7KTA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Macrophage migration inhibitory factor-like protein n=1 Tax=Medicago truncatula RepID=G7KTA5_MEDTR	SoyBase	E_val: 9.00E-64	ISS
UniRef100_UPI000233F40E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F40E related cluster n=1 Tax=unknown RepID=UPI000233F40E	SoyBase	E_val: 3.00E-74	ISS

Expression Patterns of Glyma18g43830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g43830 not represented in the dataset	Glyma18g43830 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g43830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g207400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43830

Limit To All Plant Sequences

>Glyma18g43830.1   sequence type=CDS   gene model=Glyma18g43830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTGCCTTTACATCACCACCAACCTTAACCTAGATGGAGTTGACACCAACCCCGTCTTTTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGTTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACAAGGAACCAGCAGCATATGCTGAGATAGTTTCAATGGGTGGCATAAATACAGAAGTGAAGAGGAAGCTGATTGCTACCATTGGAACCATTTTGCAGTCCAACCTGTCTATCCCAAGAACACGATTTTTCCTCAAAGTCTTTGATGTGAGTGCGTTTCGTACCAACTCCAAAATGTAA

Predicted protein sequences of Glyma18g43830

Limit To All Plant Sequences

>Glyma18g43830.1   sequence type=predicted peptide   gene model=Glyma18g43830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPCLYITTNLNLDGVDTNPVFSEATTAVSTIIGKPEKFVMVILKSSVPISFEGNKEPAAYAEIVSMGGINTEVKRKLIATIGTILQSNLSIPRTRFFLKVFDVSAFRTNSKM*

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