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Report for Sequence Feature Glyma18g43816

Feature Type:gene_model
Chromosome:Gm18
Start:53371683
stop:53373933
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43816
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01650AT Annotation by Michelle Graham. TAIR10: Tautomerase/MIF superfamily protein | chr5:243067-244033 REVERSE LENGTH=122 SoyBaseE_val: 4.00E-74ISS
GO:0006954GO-bp Annotation by Michelle Graham. GO Biological Process: inflammatory response SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1759 KOG Macrophage migration inhibitory factor JGI ISS
PTHR11954Panther MACROPHAGE MIGRATION INHIBITORY FACTOR RELATED JGI ISS
PTHR11954:SF3Panther MACROPHAGE MIGRATION INHIBITORY FACTOR-RELATED JGI ISS
PF01187PFAM Macrophage migration inhibitory factor (MIF) JGI ISS
UniRef100_C6TB94UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TB94_SOYBN SoyBaseE_val: 9.00E-81ISS
UniRef100_F4K9G5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Macrophage migration inhibitory factor family protein n=1 Tax=Arabidopsis thaliana RepID=F4K9G5_ARATH SoyBaseE_val: 2.00E-71ISS

Expression Patterns of Glyma18g43816
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g43816 not represented in the dataset
Glyma18g43816 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43816
ParalogEvidenceComments
Glyma07g19250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43816 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g207300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g43816
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g43816
>Glyma18g43816.2   sequence type=transcript   gene model=Glyma18g43816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGGGAGGTGCATTTTGTTGGTTTATGTAAAGGGCATTTTGGACATTTCGAAACATTTCTGCCAGATAAAAAGACAGTTGAATAATGAAGACAGATTTTTTTTTTTACCTTTCACCTTTGACATACAACAGCTGCAGAGTGAAACGATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCGTCGACACCTCCTCCATTCTCTCCGAAGCCACCTCAACCGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTTAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCAAAGTCGCGATTCTACTTGAAGTTTTATGACACCAAGGCCCATCAGAGTCAAGAATATGCACAATGTTTGCATGCTTTACACCAGCACTAGGTCATGGTTCCAACTTTGGATGGAATGGATCTACATTCTGAATTCCGAGTTATTTTGGTAATGATGCCATGGATGTCGGATGAACTCGTTATTCTGTTTTTGAACTTTTTTATCTGTAAAAAGTACTCTGAATTTTAATACCCCATTTTGAGGACATTATGCCATCGTAATTGGATTATGTTCAAGGACAACTGTTGGTCGTATATGTTCATGATGTTATCTCTGGACAAACATTATCTGGTGACCTTGAGATGAGCGTCATTTTAGTGGTAAATTAGAATTATGCATGGTTAAACTTGAGACTTTGTTATTTTGTAGTTACAAGAAT

>Glyma18g43816.3   sequence type=transcript   gene model=Glyma18g43816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGGGAGGTGCATTTTGTTGGTTTATGTAAAGGGCATTTTGGACATTTCGAAACATTTCTGCCAGATAAAAAGACAGTTGAATAATGAAGACAGATTTTTTTTTTTACCTTTCACCTTTGACATACAACAGCTGCAGAGTGAAACGATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCGTCGACACCTCCTCCATTCTCTCCGAAGCCACCTCAACCGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTTAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCAAAGTCGCGATTCTACTTGAAGTTTTATGACACCAAGGGTTCCAACTTTGGATGGAATGGATCTACATTCTGAATTCCGAGTTATTTTGGTAATGATGCCATGGATGTCGGATGAACTCGTTATTCTGTTTTTGAACTTTTTTATCTGTAAAAAGTACTCTGAATTTTAATACCCCATTTTGAGGACATTATGCCATCGTAATTGGATTATGTTCAAGGACAACTGTTGGTCGTATATGTTCATGATGTTATCTCTGGACAAACATTATCTGGTGACCTTGAGATGAGCGTCATTTTAGTGGTAAATTAGAATTATGCATGGTTAAACTTGAGACTTTGTTATTTTGTAGTTACAAGAATAGATTAATGGTTGTTTTTAAACTTCT
Coding sequences of Glyma18g43816
>Glyma18g43816.1   sequence type=CDS   gene model=Glyma18g43816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCGTCGACACCTCCTCCATTCTCTCCGAAGCCACCTCAACCGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTTAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCAAAGTCGCGATTCTACTTGAAGTTTTATGACACCAAGGCCCATCAGAGTCAAGAATATGCACAATGTTTGCATGCTTTACACCAGCACTAG

>Glyma18g43816.2   sequence type=CDS   gene model=Glyma18g43816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCGTCGACACCTCCTCCATTCTCTCCGAAGCCACCTCAACCGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTTAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCAAAGTCGCGATTCTACTTGAAGTTTTATGACACCAAGGCCCATCAGAGTCAAGAATATGCACAATGTTTGCATGCTTTACACCAGCACTAG

>Glyma18g43816.3   sequence type=CDS   gene model=Glyma18g43816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCGTCGACACCTCCTCCATTCTCTCCGAAGCCACCTCAACCGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTTAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCAAAGTCGCGATTCTACTTGAAGTTTTATGACACCAAGGGTTCCAACTTTGGATGGAATGGATCTACATTCTGA
Predicted protein sequences of Glyma18g43816
>Glyma18g43816.1   sequence type=predicted peptide   gene model=Glyma18g43816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPCLNLSTNVNLDGVDTSSILSEATSTVASIIGKPEAYVMIVLKGSVPISHGGSEQPAAYGELVSIGGLSPDVNKKLSAGIASILENKLSVPKSRFYLKFYDTKAHQSQEYAQCLHALHQH*

>Glyma18g43816.2   sequence type=predicted peptide   gene model=Glyma18g43816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPCLNLSTNVNLDGVDTSSILSEATSTVASIIGKPEAYVMIVLKGSVPISHGGSEQPAAYGELVSIGGLSPDVNKKLSAGIASILENKLSVPKSRFYLKFYDTKAHQSQEYAQCLHALHQH*

>Glyma18g43816.3   sequence type=predicted peptide   gene model=Glyma18g43816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPCLNLSTNVNLDGVDTSSILSEATSTVASIIGKPEAYVMIVLKGSVPISHGGSEQPAAYGELVSIGGLSPDVNKKLSAGIASILENKLSVPKSRFYLKFYDTKGSNFGWNGSTF*






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