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Report for Sequence Feature Glyma18g43790

Feature Type:gene_model
Chromosome:Gm18
Start:53368098
stop:53368781
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38360AT Annotation by Michelle Graham. TAIR10: prenylated RAB acceptor 1.B4 | chr2:16069840-16070502 REVERSE LENGTH=220 SoyBaseE_val: 3.00E-63ISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3142 KOG Prenylated rab acceptor 1 JGI ISS
PTHR19317Panther PRENYLATED RAB ACCEPTOR 1-RELATED JGI ISS
PF03208PFAM PRA1 family protein JGI ISS
UniRef100_G7JKL2UniRef Annotation by Michelle Graham. Most informative UniRef hit: PRA1 family protein B4 n=1 Tax=Medicago truncatula RepID=G7JKL2_MEDTR SoyBaseE_val: 5.00E-68ISS
UniRef100_I1N325UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N325_SOYBN SoyBaseE_val: 2.00E-132ISS

Expression Patterns of Glyma18g43790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43790
ParalogEvidenceComments
Glyma07g19240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g207100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g43790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g43790
>Glyma18g43790.2   sequence type=CDS   gene model=Glyma18g43790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCCCTCTCCCTCTCCTTCCCCACAACAACATCAACTACAAGTTCTCCCCGTCTCAAACCCTCAAACCACCGAACCGCCACCGCAACCGCAACCGCCGCAATCCGCATTCCGCTTCCTCCTATCATTTGCCACCGATAACCTCCGCCACAAGCTCTCCAACCGCCGCCCTTGGCCGGAACTCCTCGACCACACTGCCATGTCGAAGCCTCTGTCATTCTCCGAAGCCACCCTCCGCATCCGCCACAACATCTCCTACTTTCGCATCAACTATTACATCGTTGTGTCCCTCATCCTCGCCGTGTCCCTCCTCACCAGCCCCTTCTCCCTCGTCCTCCTCCTCGGCCTCCTCGCCTCGTGGCTCTTCCTCTACCTCCTCCGCCCCGCCGACCGCCCCCTCCAGCTTCTCGGCCGCACCTTCTCCGACTTTGAGACGCTCTCCCTCCTCCTCGCCACCACCTTCGTCCTTTTGTTCCTCACCTCCCTCGGCTCCCTCCTCGTCACCGCCTTCAGCGTCTCCGTCGCCCTCGTCGCCGCCCACGCTGCCCTCAGGGTCCCCGAGGATCTCTTCCTCGACGAGGGCGGCACGAACCAGCCCGCCGGGTTCCTGTCCATCCTCCGCGCTGCTGTCGCCGTTCCTCCCTCGCCCGCGCCACCCGCCCCCGGCGTCCGCGGCTGA
Predicted protein sequences of Glyma18g43790
>Glyma18g43790.2   sequence type=predicted peptide   gene model=Glyma18g43790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPSPSPSPQQHQLQVLPVSNPQTTEPPPQPQPPQSAFRFLLSFATDNLRHKLSNRRPWPELLDHTAMSKPLSFSEATLRIRHNISYFRINYYIVVSLILAVSLLTSPFSLVLLLGLLASWLFLYLLRPADRPLQLLGRTFSDFETLSLLLATTFVLLFLTSLGSLLVTAFSVSVALVAAHAALRVPEDLFLDEGGTNQPAGFLSILRAAVAVPPSPAPPAPGVRG*






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