Glyma18g43650 - SoyBase

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Report for Sequence Feature Glyma18g43650

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53224261
stop:	53227247
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01600	AT	Annotation by Michelle Graham. TAIR10: ferretin 1 \| chr5:228149-229594 REVERSE LENGTH=255	SoyBase	E_val: 4.00E-115	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0006879	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular iron ion homeostasis	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010039	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to iron ion	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0008199	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferric iron binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0046914	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transition metal ion binding	SoyBase	N/A	ISS
KOG2332	KOG	Ferritin	JGI		ISS
PTHR11431	Panther	FERRITIN	JGI		ISS
PTHR11431:SF8	Panther	FERRITIN LIGHT CHAIN	JGI		ISS
PF00210	PFAM	Ferritin-like domain	JGI		ISS
UniRef100_A5A410	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ferritin n=3 Tax=Glycine RepID=A5A410_GLYSO	SoyBase	E_val: 0	ISS
UniRef100_A5A410	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ferritin n=3 Tax=Glycine RepID=A5A410_GLYSO	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43650

Paralog	Evidence	Comments
Glyma07g19060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g205800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g43650

Limit To All Plant Sequences

>Glyma18g43650.3   sequence type=transcript   gene model=Glyma18g43650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACGCAAGCTTCATCCAAATCCACCCCAACACAAATCTTAGCCGCCATTGATTTTTCCTCTTCCATTTCTCTTACTTTCTCAGCCTTTTTCGATTACCCATTTGGTTATTTCGCCCTAATGGCTCTTGCTCCATCCAAAGTTTCCACCTTTTCTGGTTTTTCTCCCAAACCCAGTGTTGGGGGTGCTCAGAAAAACCCAACTTGCTCTGTTTCTCTGAGCTTTTTGAATGAGAAACTTGGAAGCAGAAACCTTAGGGTTTGTGCCTCAACGGTGCCTCTCACTGGGGTGATTTTTGAACCGTTTGAGGAGGTTAAGAAGAGCGAGCTTGCTGTTCCAACTGCTCCCCAAGTCTCGTTGGCTCGTCAGAACTACGCTGATGAGTGTGAATCTGCGATTAACGAGCAGATAAATGTGGAATACAATGCTTCCTACGTGTACCACTCCTTGTTTGCATACTTTGACAGGGACAACGTGGCTCTCAAGGGATTTGCCAAGTTCTTCAAGGAATCTAGTGAGGAAGAAAGAGAGCACGCTGAAAAGCTCATGAAATATCAGAACACTCGCGGGGGAAGAGTTGTACTTCACCCCATCAAGAATGTCCCCTCAGAATTTGAGCATGTGGAAAAGGGGGATGCATTGTATGCAATGGAATTAGCTTTGTCTTTGGAGAAGTTAGTGAATGAGAAACTTCTGAATGTGCACAGTGTGGCAGATCGCAACAATGACCCTCAAATGGCCGACTTCATTGAAAGCGAGTTTTTGTCTGAACAGGTGAAACTCATCTAAACCGTAGAATGGTTGTGGATGCATAGAACTTCTGTAATTTATAAAATTTTAACTAAGAAAAGGAAAGAAATTGACAAAGTATGAAAAAAATAAGAGGAAATGTATGTGGCTTTTGTTAAGAACTAACTTTGAATTTGGCCATGCTATTGTGTGTGTTGAATGCTATCCTGGAAGAAAAGAGGAAGACACAAACTAAAAATAAATTGAAAAGCATTAAATGTGCATCTATGCTGTGAACATTGAACTTAAATTTGCAAGTTGACTCTGTATCTTTGCTGATATTACCAATGTTTGTTGAAACATCACTTTCTTTTGTACAGGTTGAATCAATTAAGAAAATTTCAGAGTATGTGGCTCAGTTGAGAAGGGTTGGAAAGGGTCACGGTGTTTGGCACTTTGATCAAAGACTTCTTGATTAGGAAGATGCTGCTTAATCTTGAATAGCCTTATTATTAGTCTTCATTTACATTTGGTCTTTTCTGAAATTCTGGGTTGTTTTCTAATTTAGTAGTATTTAAATGTTTTTCCTATGTACTGAGATTTAGGAACTCGGAGTAATGTAATTGCTAGTAGCACATGTAAAAGGCTGCAAGCCTATTATGCAATAACATTTGATATCTGCATTTCAATTATCTCCAGTAAAATGTCATTGGTTAAAGCTTA

Coding sequences of Glyma18g43650

Limit To All Plant Sequences

>Glyma18g43650.2   sequence type=CDS   gene model=Glyma18g43650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGCTCCATCCAAAGTTTCCACCTTTTCTGGTTTTTCTCCCAAACCCAGTGTTGGGGGTGCTCAGAAAAACCCAACTTGCTCTGTTTCTCTGAGCTTTTTGAATGAGAAACTTGGAAGCAGAAACCTTAGGGTTTGTGCCTCAACGGTGCCTCTCACTGGGGTGATTTTTGAACCGTTTGAGGAGGTTAAGAAGAGCGAGCTTGCTGTTCCAACTGCTCCCCAAGTCTCGTTGGCTCGTCAGAACTACGCTGATGAGTGTGAATCTGCGATTAACGAGCAGATAAATGTGGAATACAATGCTTCCTACGTGTACCACTCCTTGTTTGCATACTTTGACAGGGACAACGTGGCTCTCAAGGGATTTGCCAAGTTCTTCAAGGAATCTAGTGAGGAAGAAAGAGAGCACGCTGAAAAGCTCATGAAATATCAGAACACTCGCGGGGGAAGAGTTGTACTTCACCCCATCAAGAATGTCCCCTCAGAATTTGAGCATGTGGAAAAGGGGGATGCATTGTATGCAATGGAATTAGCTTTGTCTTTGGAGAAGTTAGTGAATGAGAAACTTCTGAATGTGCACAGTGTGGCAGATCGCAACAATGACCCTCAAATGGCCGACTTCATTGAAAGCGAGTTTTTGTCTGAACAGGTTGAATCAATTAAGAAAATTTCAGAGTATGTGGCTCAGTTGAGAAGGGTTGGAAAGGGTCACGGTGTTTGGCACTTTGATCAAAGACTTCTTGATTAG

>Glyma18g43650.3   sequence type=CDS   gene model=Glyma18g43650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGCTCCATCCAAAGTTTCCACCTTTTCTGGTTTTTCTCCCAAACCCAGTGTTGGGGGTGCTCAGAAAAACCCAACTTGCTCTGTTTCTCTGAGCTTTTTGAATGAGAAACTTGGAAGCAGAAACCTTAGGGTTTGTGCCTCAACGGTGCCTCTCACTGGGGTGATTTTTGAACCGTTTGAGGAGGTTAAGAAGAGCGAGCTTGCTGTTCCAACTGCTCCCCAAGTCTCGTTGGCTCGTCAGAACTACGCTGATGAGTGTGAATCTGCGATTAACGAGCAGATAAATGTGGAATACAATGCTTCCTACGTGTACCACTCCTTGTTTGCATACTTTGACAGGGACAACGTGGCTCTCAAGGGATTTGCCAAGTTCTTCAAGGAATCTAGTGAGGAAGAAAGAGAGCACGCTGAAAAGCTCATGAAATATCAGAACACTCGCGGGGGAAGAGTTGTACTTCACCCCATCAAGAATGTCCCCTCAGAATTTGAGCATGTGGAAAAGGGGGATGCATTGTATGCAATGGAATTAGCTTTGTCTTTGGAGAAGTTAGTGAATGAGAAACTTCTGAATGTGCACAGTGTGGCAGATCGCAACAATGACCCTCAAATGGCCGACTTCATTGAAAGCGAGTTTTTGTCTGAACAGGTGAAACTCATCTAA

Predicted protein sequences of Glyma18g43650

Limit To All Plant Sequences

>Glyma18g43650.2   sequence type=predicted peptide   gene model=Glyma18g43650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALAPSKVSTFSGFSPKPSVGGAQKNPTCSVSLSFLNEKLGSRNLRVCASTVPLTGVIFEPFEEVKKSELAVPTAPQVSLARQNYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFAKFFKESSEEEREHAEKLMKYQNTRGGRVVLHPIKNVPSEFEHVEKGDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQMADFIESEFLSEQVESIKKISEYVAQLRRVGKGHGVWHFDQRLLD*

>Glyma18g43650.3   sequence type=predicted peptide   gene model=Glyma18g43650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALAPSKVSTFSGFSPKPSVGGAQKNPTCSVSLSFLNEKLGSRNLRVCASTVPLTGVIFEPFEEVKKSELAVPTAPQVSLARQNYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFAKFFKESSEEEREHAEKLMKYQNTRGGRVVLHPIKNVPSEFEHVEKGDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQMADFIESEFLSEQVKLI*

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