Glyma18g43621 - SoyBase

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Report for Sequence Feature Glyma18g43621

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53193388
stop:	53196963
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43621

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47890	AT	Annotation by Michelle Graham. TAIR10: receptor like protein 7 \| chr1:17643976-17647035 FORWARD LENGTH=1019	SoyBase	E_val: 1.00E-133	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG0472	KOG	Leucine-rich repeat protein	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF473	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_G7JQ72	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7JQ72_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E6CE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E6CE related cluster n=1 Tax=unknown RepID=UPI000233E6CE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43621

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g43621 not represented in the dataset	Glyma18g43621 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g43621 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g205500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43621

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43621

Limit To All Plant Sequences

>Glyma18g43621.1   sequence type=CDS   gene model=Glyma18g43621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAATCCACCAAATCTTCTTTACTTTCTTTATACCCTTATGTTTGATAAACATCGACGTAGCAACATTCCATTGTCTTGACCATCAGCAATTCTTATTACTCCACTTGAAGGACAACCTTGTATTCAACCCTGACACATCCAAAAAATTGGTTCACTGGAACCATAGTGGCGATTGCTGTCAATGGAATGGAGTAACATGCAGCATGGGCCAAGTAATTGGTCTTGATTTGTGTGAGGAATTTATTTCTGGAGGACTGAATAATTCAAGTCTCTTCAAGCTGCAATATTTGCAGAATTTGAATCTTGCTTACAATGATTTCAATTCTTCCATTCCTTTGGAGTTTGACAAGCTCAAGAATTTGAGGTGTTTAAATTTGTCAAATGCTGGATTTCATGGGCAGATTCCTGCTCAGATTTCTCACCTGACAAATTTGACAACACTTGACTTGTCTACATCACTTGCCTCACAACATTTTCTCAAACTCCAGAATCCAAACATTGAGATGATTTTACAGAACCTTACAAAACTCACAGAACTATATCTTGATGGTGTGAGGGTATCTGCTGAGGGAAAGGAGTGGTGTCATGCTTTATCTTCTCTTCAAAAGCTAAAAGTGCTGAGCATGGCATCATGCAATATCTCAGGGCCAATTGATTCTTCACTAGAAGCACTTGAGGAACTCTCAGTAGTTCGACTGAATCTGAATAATATCTCAAGCCCTGTGCCTGAATTCCTTGTTAATTTCTCCAATTTGAATGTCTTGGAGCTTAGCAGTTGCTGGCTGAGGGGTAATTTTCCAAAGGGTATCTTTCAAATGCAAACATTAAGTGTTCTTGATATCTCAAACAACCAGGATCTTCATGGTGCTTTGCCAAATTTCCTACAACAAGAAGTTCTTCACACCATGAATCTTAGTAACACAAATTTCTCTGGGAAATTGCCAGGTTCTATTTCAAATTTAAAGCAGTTGTCCAAATTAGATCTATCTAACTGCCAATTCATTGAAACACTCCCAATTTCAATGTCAGAAATCACTCAACTTGTTCATGTGGACTTGTCTTTTAACAAGTTTACTGGTCCCCTTCCCTCTTTGAAGATGGCAAAAAATCTCAGATATTTATCTCTCTTACACAATAATTTGACAGGAGCCATTCCTACAACTCATTTTGAGGGACTTGAAAATCTACTCACTGTCAATTTAGGAGATAATTCCCTCAACGGAAAAATTCCTTTGACTCTTTTTACACTTCCTTCTTTGCAAGAACTAACACTTTCTCATAATGGATTTGATGGCCTATTAGATGAATTTCCAAATGTTTCTGCCTCTAAACTACAGTTGATTGACTTGAGCAGCAACAAATTGCAGGGTCCTATTCCGGAGTCTATCTTTCATATTAATGGACTCCGTTTCCTACAACTTTCTGCAAATGAATTCAATGGAACAATAAAACTTGTTATGATTCAGAGGCTTCACAATTTGCATACATTAGGTCTTTCACACAACAAATTGTCAGTTGATATAATTGTCAATGATGATCATGACCTATCATCCTTTCCCAGCATGAAATATATATTGTTGGCTTCTTGCAAGTTGAGAGAATTTCCAGGGTTCTTGAGAAACCAATCCCAACTAAATGCTTTAGACCTATCCAACAATCAGATTCAAGGAATAGTTCCTAACTGGATCTGGAGATTTGACTCTCTGGTTTATCTCAATCTTTCCAACAATTTTCTCACAAATATGGAAGGACCCTTTGATGATCTGAATTCCAATCTATACATCCTTGATCTTCATTCCAATCAACTTTCTGGATCAATTCCTACTTTCACAAAATATGCTGTTCATTTGGACTACTCAAGCAATAAATTCAACACTGCCCCACTTGACTTGGATAAGTATATCCCTTTTGTATACTTTCTCTCCCTTTCAAATAACACCTTTCAAGGGAAAATCCATGAAGCCTTTTGTAATCTTTCTTCTCTGCGGTTGCTTGATCTTTCCTATAATCGCTTCAATGACCTCATTCCCAAGTGTTTGATGAGAAGGAATAATACCCTCAGAGTACTAAATCTTGCTGGAAACAAACTCAAGGGTTATCTTTCTGATACCATTTCAAGTTCATGCAATTTAAGATTCCTTAATCTCAATGGAAATCTCTTGGGTGGTGTTATCCCAGACTCTCTAGCCAATTGCCAGAGTCTACAAGTCTTAAATCTTGGAAGCAATCAGTTTAGTGATAGATTTCCATGCTTCTTAAGTAATATTTCCTCCCTGAGAGTGCTAATTTTGAGGTCAAACAAACTCAATGGTCCAATTGCATGCCCTCATAACACTAGCAATTGGGAGATGCTACATATTGTTGATCTAGCCTACAATAATTTCTCTGGTATACTACCTGGACCATTTTTTAGAAGCTGGACAAAAATGATGGGTAATGAGGCTGAATCCCATGAAAAATACGGGTCTTTATTTTTTGACGTGTTTGACAATCATGCCACTGTGCGTTACAATAATCTGTTCACAGTTATCAGCAAATTTCTTGTAATGAAATTATACAAACTGTTGGCAACTGAACCTTATTTTGTGGCTGACCACATATTTGCCTATTATGTCACTTCTAACGAATTCGGTGGTCGCTACTTGGATTCAGTTACAATTGTGAACAAGGCTTTGCAAATGAAGTTGATCAAAATTCCCACTATCTTCACTTCCTTAGATCTCTCCTCGAACCATTTTGAAGGTCCAATACCTGAAGAACTTGTGAGTTTGAAAGCACTCAATGTTCTTAATTTGTCACACAATGCTTTCTCAAGTCACATCCCCTTGTCAATTGGAAGTTTGGTGCATCTTGAATCCTTGGACTTGTCAAATAACAATTTGAGCGGAAAAATCCCTCTTGAGCTTGCTAGTTTAAATTTTCTAGCATACTTGAATCTCTCATTTAATCAATTGAGGGGGCAAATCCCAACAGGTGCTCAAATGCAAACATTTGATGCAAGTTATTTTGAAGGCAATGAAGGATTATGTGGGCCACCCTTAAAAGATTGCACCAACGATAGAGTGGGACATTCCCTTCCAACACCATATGAAATGCATGGATCAATTGACTGGAATTTCCTAAGTGTGGAGTTGGGATTCATTTTTGGCTTTGGAATCACTATCCTTCCCCTTATGTTCTTCCAGAGGTGGGGGCTTTTGTATTGGCAGCGCGTTGATGAATTGCTTTACATGCTTGTTCCTCAGTTTGGCTTTGTTTATGAACACTATAGAGGGCAAAGGTACAGAACTCTAAGGTGGATAGTGTAG

Predicted protein sequences of Glyma18g43621

Limit To All Plant Sequences

>Glyma18g43621.1   sequence type=predicted peptide   gene model=Glyma18g43621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIHQIFFTFFIPLCLINIDVATFHCLDHQQFLLLHLKDNLVFNPDTSKKLVHWNHSGDCCQWNGVTCSMGQVIGLDLCEEFISGGLNNSSLFKLQYLQNLNLAYNDFNSSIPLEFDKLKNLRCLNLSNAGFHGQIPAQISHLTNLTTLDLSTSLASQHFLKLQNPNIEMILQNLTKLTELYLDGVRVSAEGKEWCHALSSLQKLKVLSMASCNISGPIDSSLEALEELSVVRLNLNNISSPVPEFLVNFSNLNVLELSSCWLRGNFPKGIFQMQTLSVLDISNNQDLHGALPNFLQQEVLHTMNLSNTNFSGKLPGSISNLKQLSKLDLSNCQFIETLPISMSEITQLVHVDLSFNKFTGPLPSLKMAKNLRYLSLLHNNLTGAIPTTHFEGLENLLTVNLGDNSLNGKIPLTLFTLPSLQELTLSHNGFDGLLDEFPNVSASKLQLIDLSSNKLQGPIPESIFHINGLRFLQLSANEFNGTIKLVMIQRLHNLHTLGLSHNKLSVDIIVNDDHDLSSFPSMKYILLASCKLREFPGFLRNQSQLNALDLSNNQIQGIVPNWIWRFDSLVYLNLSNNFLTNMEGPFDDLNSNLYILDLHSNQLSGSIPTFTKYAVHLDYSSNKFNTAPLDLDKYIPFVYFLSLSNNTFQGKIHEAFCNLSSLRLLDLSYNRFNDLIPKCLMRRNNTLRVLNLAGNKLKGYLSDTISSSCNLRFLNLNGNLLGGVIPDSLANCQSLQVLNLGSNQFSDRFPCFLSNISSLRVLILRSNKLNGPIACPHNTSNWEMLHIVDLAYNNFSGILPGPFFRSWTKMMGNEAESHEKYGSLFFDVFDNHATVRYNNLFTVISKFLVMKLYKLLATEPYFVADHIFAYYVTSNEFGGRYLDSVTIVNKALQMKLIKIPTIFTSLDLSSNHFEGPIPEELVSLKALNVLNLSHNAFSSHIPLSIGSLVHLESLDLSNNNLSGKIPLELASLNFLAYLNLSFNQLRGQIPTGAQMQTFDASYFEGNEGLCGPPLKDCTNDRVGHSLPTPYEMHGSIDWNFLSVELGFIFGFGITILPLMFFQRWGLLYWQRVDELLYMLVPQFGFVYEHYRGQRYRTLRWIV*

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