Glyma18g43550 - SoyBase

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Report for Sequence Feature Glyma18g43550

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53115611
stop:	53117974
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38300	AT	Annotation by Michelle Graham. TAIR10: myb-like HTH transcriptional regulator family protein \| chr2:16044175-16045679 REVERSE LENGTH=340	SoyBase	E_val: 7.00E-63	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7KSC8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR10 n=1 Tax=Medicago truncatula RepID=G7KSC8_MEDTR	SoyBase	E_val: 2.00E-124	ISS
UniRef100_UPI000233E6CC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E6CC related cluster n=1 Tax=unknown RepID=UPI000233E6CC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43550

Paralog	Evidence	Comments
Glyma07g18870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g204900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g43550

Limit To All Plant Sequences

>Glyma18g43550.3   sequence type=transcript   gene model=Glyma18g43550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTACGATATGAGCACCAAATTATTCGTTTACTCATTTCAGAGAGAGAGAGAGGGAGAGAGAGAGAAGCTATTCTAACTTATAAGTTCTGTGTAAAGATCAATCTACGATTTAGAGTACTTTCACTATCTGGGTATCAGATATGTATATACGGCTTGTCATCGATTTATGTAGCCATATATCATATGGTGTTGCTAAGATCAAGGGTTTTTTGTTCCAAGCGTAGAGGAGGAAGAACAATAGTAGGAGTTGCAAGAAAAACTATTCAATTTTGTGAATATTTGGTGGTTTAATTCCACCAATAATTAACATATAGAGTCATAGAGGAAAGAAACTGTTTCTTTTCTCTTCCTGCTGCTTCAAGTTGTAATCTTAAAATCCAGTTTCAAAGGCAAGTTTGGAAGGATTATGAGGATGGAAGAAGAGAGACATGGCTCATCGGAATGTTCAAAGACAAGCCCTTCTAACGAAGAAGATTGTGAAGAAAGTGAGGGCTATGAAGATGAAAGCAAGCAAAACAACAATAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAGACAACAGTGAGGCCCTATGTTAGATCCAAGATGCCAAGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTAGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGCCATCTACAGATGTACAGGAGCAAGAAGGTAGACACAAATCAAGAAACTGGAGACAGAAATGTTTACAATCTTAGCCAACTTCCCATGCTTCAAGGCTATAATCCAAGCCAAAGTTCATCATACAGATATGGATATGGGGATGCTTCTCTCGCTATCTATGAAAACATGGTGCACAGGCCTTTCATGAATAGAAGTTCATTAGATGAATCTGGAGCTGAATTTTGTGGCAGCAGATTAACTGAGAGAATCCATGGGACCAATAGTAACATCAATTGGACTCGTAACATGTTCCAAGTTGATTCTTCTTCTAGTTTCAATGAACCATCAACAAGCAAAGTCCAAGAACCAAAACATAAGTTCTTCTCATTTGGTGGTAATGAATCCTCATGCACACAAATCAAAATGAGCCAGGTTGATCTACATCAATCAACTCAGCTGCAACCAGGTGCACAAGAGCTCATGCCTAATAATAAGTTTGCAACAAATGAGGTGGAACTGAAGACCTTGAAAAGAAAGGCTTCAGATATTGACCTTGATTTGAATCTGTCACTTAAGTTAAATTCAAGGGTCAATGCTGAGAACCAAGGAAGCATGGTGGACCATGAAGTTGTTGATAGCAATCTATCACTTTCTTTGTGTTCACAATCCTCCTCCTTTAGCAGCAACAGGTTGAAAAACTCACAAGATCACTCTAAGGAGCAAGGGGAAATTATTAGAGCCAGTGCTCTGGATCTAACTATATGAATGAGACAAACTCTAAGTGAGATCCTGAGGTACCTGTCAGAAATTATGCATATTGTAACCAATTATTACATTTAACTGACACAAATATATTTTCTTCTTGTCTCTATATGAACAGTGAATAACAGTTTGTCTACTATTAAATAGTGGCACTAGCTAGTTGCTAAGAATCATTATCTCGACACCAGTGTTAGTAGTTCTACACTTCTGTCACAGAAATGCTAAAAGAGAAAGTTCAGACAACTAAATACTCATACAAGAAAAAGCCGCTTTAATTTGTGCACCTCCTAGATCAATAATGGGTTCAAGATATTTTTTTTTCTTATAAAAACAGTTTCTGTGTGATTGTCATACTGTGAAGCTTGTTT

Coding sequences of Glyma18g43550

Limit To All Plant Sequences

>Glyma18g43550.2   sequence type=CDS   gene model=Glyma18g43550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATGGAAGAAGAGAGACATGGCTCATCGGAATGTTCAAAGACAAGCCCTTCTAACGAAGAAGATTGTGAAGAAAGTGAGGGCTATGAAGATGAAAGCAAGCAAAACAACAATAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAGACAACAGTGAGGCCCTATGTTAGATCCAAGATGCCAAGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTAGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGCCATCTACAGATGTACAGGAGCAAGAAGGTAGACACAAATCAAGTATTGGCTGATCCTAGGTTTCTTGTAGAAACTGGAGACAGAAATGTTTACAATCTTAGCCAACTTCCCATGCTTCAAGGCTATAATCCAAGCCAAAGTTCATCATACAGATATGGATATGGGGATGCTTCTCTCGCTATCTATGAAAACATGGTGCACAGGCCTTTCATGAATAGAAGTTCATTAGATGAATCTGGAGCTGAATTTTGTGGCAGCAGATTAACTGAGAGAATCCATGGGACCAATAGTAACATCAATTGGACTCGTAACATGTTCCAAGTTGATTCTTCTTCTAGTTTCAATGAACCATCAACAAGCAAAGTCCAAGAACCAAAACATAAGTTCTTCTCATTTGGTGGTAATGAATCCTCATGCACACAAATCAAAATGAGCCAGGTTGATCTACATCAATCAACTCAGCTGCAACCAGGTGCACAAGAGCTCATGCCTAATAATAAGTTTGCAACAAATGAGGTGGAACTGAAGACCTTGAAAAGAAAGGCTTCAGATATTGACCTTGATTTGAATCTGTCACTTAAGTTAAATTCAAGGGTCAATGCTGAGAACCAAGGAAGCATGGTGGACCATGAAGTTGTTGATAGCAATCTATCACTTTCTTTGTGTTCACAATCCTCCTCCTTTAGCAGCAACAGGTTGAAAAACTCACAAGATCACTCTAAGGAGCAAGGGGAAATTATTAGAGCCAGTGCTCTGGATCTAACTATATGA

>Glyma18g43550.3   sequence type=CDS   gene model=Glyma18g43550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATGGAAGAAGAGAGACATGGCTCATCGGAATGTTCAAAGACAAGCCCTTCTAACGAAGAAGATTGTGAAGAAAGTGAGGGCTATGAAGATGAAAGCAAGCAAAACAACAATAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAGACAACAGTGAGGCCCTATGTTAGATCCAAGATGCCAAGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTAGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGCCATCTACAGATGTACAGGAGCAAGAAGGTAGACACAAATCAAGAAACTGGAGACAGAAATGTTTACAATCTTAGCCAACTTCCCATGCTTCAAGGCTATAATCCAAGCCAAAGTTCATCATACAGATATGGATATGGGGATGCTTCTCTCGCTATCTATGAAAACATGGTGCACAGGCCTTTCATGAATAGAAGTTCATTAGATGAATCTGGAGCTGAATTTTGTGGCAGCAGATTAACTGAGAGAATCCATGGGACCAATAGTAACATCAATTGGACTCGTAACATGTTCCAAGTTGATTCTTCTTCTAGTTTCAATGAACCATCAACAAGCAAAGTCCAAGAACCAAAACATAAGTTCTTCTCATTTGGTGGTAATGAATCCTCATGCACACAAATCAAAATGAGCCAGGTTGATCTACATCAATCAACTCAGCTGCAACCAGGTGCACAAGAGCTCATGCCTAATAATAAGTTTGCAACAAATGAGGTGGAACTGAAGACCTTGAAAAGAAAGGCTTCAGATATTGACCTTGATTTGAATCTGTCACTTAAGTTAAATTCAAGGGTCAATGCTGAGAACCAAGGAAGCATGGTGGACCATGAAGTTGTTGATAGCAATCTATCACTTTCTTTGTGTTCACAATCCTCCTCCTTTAGCAGCAACAGGTTGAAAAACTCACAAGATCACTCTAAGGAGCAAGGGGAAATTATTAGAGCCAGTGCTCTGGATCTAACTATATGA

Predicted protein sequences of Glyma18g43550

Limit To All Plant Sequences

>Glyma18g43550.2   sequence type=predicted peptide   gene model=Glyma18g43550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMEEERHGSSECSKTSPSNEEDCEESEGYEDESKQNNNNGGSSSNSTVEENEKKTTVRPYVRSKMPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDTNQVLADPRFLVETGDRNVYNLSQLPMLQGYNPSQSSSYRYGYGDASLAIYENMVHRPFMNRSSLDESGAEFCGSRLTERIHGTNSNINWTRNMFQVDSSSSFNEPSTSKVQEPKHKFFSFGGNESSCTQIKMSQVDLHQSTQLQPGAQELMPNNKFATNEVELKTLKRKASDIDLDLNLSLKLNSRVNAENQGSMVDHEVVDSNLSLSLCSQSSSFSSNRLKNSQDHSKEQGEIIRASALDLTI*

>Glyma18g43550.3   sequence type=predicted peptide   gene model=Glyma18g43550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMEEERHGSSECSKTSPSNEEDCEESEGYEDESKQNNNNGGSSSNSTVEENEKKTTVRPYVRSKMPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDTNQETGDRNVYNLSQLPMLQGYNPSQSSSYRYGYGDASLAIYENMVHRPFMNRSSLDESGAEFCGSRLTERIHGTNSNINWTRNMFQVDSSSSFNEPSTSKVQEPKHKFFSFGGNESSCTQIKMSQVDLHQSTQLQPGAQELMPNNKFATNEVELKTLKRKASDIDLDLNLSLKLNSRVNAENQGSMVDHEVVDSNLSLSLCSQSSSFSSNRLKNSQDHSKEQGEIIRASALDLTI*

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