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Report for Sequence Feature Glyma18g43540

Feature Type:gene_model
Chromosome:Gm18
Start:53090646
stop:53095460
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38290AT Annotation by Michelle Graham. TAIR10: ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006820GO-bp Annotation by Michelle Graham. GO Biological Process: anion transport SoyBaseN/AISS
GO:0006862GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006995GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation SoyBaseN/AISS
GO:0007154GO-bp Annotation by Michelle Graham. GO Biological Process: cell communication SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009581GO-bp Annotation by Michelle Graham. GO Biological Process: detection of external stimulus SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015695GO-bp Annotation by Michelle Graham. GO Biological Process: organic cation transport SoyBaseN/AISS
GO:0015696GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transport SoyBaseN/AISS
GO:0015802GO-bp Annotation by Michelle Graham. GO Biological Process: basic amino acid transport SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0043269GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ion transport SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0008519GO-mf Annotation by Michelle Graham. GO Molecular Function: ammonium transmembrane transporter activity SoyBaseN/AISS
GO:0015398GO-mf Annotation by Michelle Graham. GO Molecular Function: high affinity secondary active ammonium transmembrane transporter activity SoyBaseN/AISS
KOG0682 KOG Ammonia permease JGI ISS
PTHR11730Panther AMMONIUM TRANSPORTER JGI ISS
PTHR11730:SF1Panther AMMONIUM TRANSPORTER JGI ISS
PF00909PFAM Ammonium Transporter Family JGI ISS
UniRef100_G7KSC5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ammonium transporter 3 member n=2 Tax=Medicago truncatula RepID=G7KSC5_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N306UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N306_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g43540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43540
ParalogEvidenceComments
Glyma07g18670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g204800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g43540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g43540
>Glyma18g43540.2   sequence type=transcript   gene model=Glyma18g43540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCAAACCGAGTATCATCCGAGTTTTCAAATTACCATGAAGCTCCATATACGCATACCATCCCACAAAAACACAAAGTAAAATTGCCACAAACAATTCACTAGCACATACACATACCCTCTTTCTCATATCCTATTCAAGTCACCATCAGATATATTAAATGTAAACACTTGTCCATCAAGGATTCGAACTTCATTAGTTCTCAAACTTTATTTTATCTCATCGTGAGGGACTAATTCCTTCTTATAGACGCAACTTTCATCGGCCACAAATGCACATGTATAATTAATTTCATATATGTATATATAGCATCAGAGAGAGAACAATTCTTTGAAGGGTGAAAAACCTTGATCAAGAATTGAAGCATTAATCTTCAACCATGGCCACACCCTTGGCCTACCAAGAGCACCTTCCGGCGGCACCCAGTTGGCTGAACAAAGGTGACAACGCATGGCAGTTAACAGCAGCCACCCTCGTTGGTCTTCAAAGCATGCCGGGTCTCGTGATCCTCTACGCAAGCATAGTGAAGAAGAAATGGGCAGTGAATTCAGCTTTCATGGCTCTCTATGCCTTTGCAGCAGTTCTAATATGTTGGGTGCTTGTGTGTTACCGCATGGCCTTTGGAGAAGAACTTTTACCCTTCTGGGGTAAGGGTGCTCCAGCACTAGGCCAGAAGTTCCTCACAAAACGAGCCGTAGTCAATGAAACCATCCACCACTTTCATAATGGCACTGTTGAATCCCCTCCAGAAGAACCCTTTTACCCTATGGCCTCACTTGTGTATTTCCAATTCACTTTTGCTGCTATTACCCTTATTTTGTTGGCTGGCTCTGTCCTCGGCCGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTGATCTTTTCCTACACTGTTGGGGCTTTTAGTCTTTGGGGTGGTGGCTTTCTCTACCAATGGGGGGTTATTGACTATTCTGGCGGCTATGTCATCCACCTTTCTTCTGGAATCGCTGGTTTAACTGCTGCTTACTGGGTTGGACCAAGGTTGAAGAGTGACAGGGAGAGGTTTCCACCAAACAACGTGCTACTTATGCTTGCTGGTGCTGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAACGGTGGAGCACCATATGCTGCAAACATTGCATCTTCAATTGCGGTGTTGAACACAAACATTTGTGCAGCCACTAGCCTCCTTGTGTGGACAACTTTGGATGTCATTTTCTTTGGGAAACCTTCGGTGATTGGAGCTGTGCAGGGCATGATGACTGGACTTGTATGCATCACCCCAGGAGCAGGGCTTGTGCAATCGTGGGCTGCTATACTGATGGGAATATTATCTGGGAGCATTCCATGGGTGACCATGATGATTTTGCATAAAAAGTCAACCTTGCTACAAAAGGTCAGGGTTTCTTAACTCACATCACAAATTTTTCCCCACAAAATACTTATAGTACTCATTTTATCCTTCACTTTCATTTTGTCTTTTTTTTTTCATCTCTTTTTCCATTTTTATCATATCATTTGTTACATCTATTACTCACTCTTTCTCTATATTTTTATTTATTTATCTTTCCATCCATAGACTCTTACATTTATAATTTAAGCATAGACTTTAGGTGTAGCTTCACTTTTGCAGTGCACGTGTTTGTGAATATTCATTTAATATTAGAAAAAAATAATGGCCTAAACTTCAGGTCATCCGTTGATTCCAACCACTTTCATTTTATTT
Coding sequences of Glyma18g43540
>Glyma18g43540.1   sequence type=CDS   gene model=Glyma18g43540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACACCCTTGGCCTACCAAGAGCACCTTCCGGCGGCACCCAGTTGGCTGAACAAAGGTGACAACGCATGGCAGTTAACAGCAGCCACCCTCGTTGGTCTTCAAAGCATGCCGGGTCTCGTGATCCTCTACGCAAGCATAGTGAAGAAGAAATGGGCAGTGAATTCAGCTTTCATGGCTCTCTATGCCTTTGCAGCAGTTCTAATATGTTGGGTGCTTGTGTGTTACCGCATGGCCTTTGGAGAAGAACTTTTACCCTTCTGGGGTAAGGGTGCTCCAGCACTAGGCCAGAAGTTCCTCACAAAACGAGCCGTAGTCAATGAAACCATCCACCACTTTCATAATGGCACTGTTGAATCCCCTCCAGAAGAACCCTTTTACCCTATGGCCTCACTTGTGTATTTCCAATTCACTTTTGCTGCTATTACCCTTATTTTGTTGGCTGGCTCTGTCCTCGGCCGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTGATCTTTTCCTACACTGTTGGGGCTTTTAGTCTTTGGGGTGGTGGCTTTCTCTACCAATGGGGGGTTATTGACTATTCTGGCGGCTATGTCATCCACCTTTCTTCTGGAATCGCTGGTTTAACTGCTGCTTACTGGGTTGGACCAAGGTTGAAGAGTGACAGGGAGAGGTTTCCACCAAACAACGTGCTACTTATGCTTGCTGGTGCTGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAACGGTGGAGCACCATATGCTGCAAACATTGCATCTTCAATTGCGGTGTTGAACACAAACATTTGTGCAGCCACTAGCCTCCTTGTGTGGACAACTTTGGATGTCATTTTCTTTGGGAAACCTTCGGTGATTGGAGCTGTGCAGGGCATGATGACTGGACTTGTATGCATCACCCCAGGAGCAGGGCTTGTGCAATCGTGGGCTGCTATACTGATGGGAATATTATCTGGGAGCATTCCATGGGTGACCATGATGATTTTGCATAAAAAGTCAACCTTGCTACAAAAGGTGGATGACACCCTTGGTGTGTTTCACACACATGCTGTGGCTGGCCTTTTGGGTGGTCTCCTCACAGGTCTATTAGCAGAACCAGCCCTTTGTAGACTACTATTGCCAGTTACCAACTCAAGGGGTGCATTCTATGGTGGTGGTGGTGGTATGCAGTTCTTCAAGCAATTGGTGGCGGCCATGTTTGTCATTGGATGGAACTTGGTGTCCACCACCATCATTCTCCTTGTCATAAAATTGTTCATACCCTTGAGGATGCCGGATGAGCAGCTGGAAATCGGCGACGACGCCGTCCACGGCGAGGAAGCTTATGCCCTCTGGGGTGATGGAGAAAAATATGACCCAACTAGGCATGGTTCCTTGCAAAGTGGCAACACTTTTGTGTCACCTTATGTTAATGGTGCAAGAGGGGTGACCATAAACTTATGA

>Glyma18g43540.2   sequence type=CDS   gene model=Glyma18g43540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACACCCTTGGCCTACCAAGAGCACCTTCCGGCGGCACCCAGTTGGCTGAACAAAGGTGACAACGCATGGCAGTTAACAGCAGCCACCCTCGTTGGTCTTCAAAGCATGCCGGGTCTCGTGATCCTCTACGCAAGCATAGTGAAGAAGAAATGGGCAGTGAATTCAGCTTTCATGGCTCTCTATGCCTTTGCAGCAGTTCTAATATGTTGGGTGCTTGTGTGTTACCGCATGGCCTTTGGAGAAGAACTTTTACCCTTCTGGGGTAAGGGTGCTCCAGCACTAGGCCAGAAGTTCCTCACAAAACGAGCCGTAGTCAATGAAACCATCCACCACTTTCATAATGGCACTGTTGAATCCCCTCCAGAAGAACCCTTTTACCCTATGGCCTCACTTGTGTATTTCCAATTCACTTTTGCTGCTATTACCCTTATTTTGTTGGCTGGCTCTGTCCTCGGCCGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTGATCTTTTCCTACACTGTTGGGGCTTTTAGTCTTTGGGGTGGTGGCTTTCTCTACCAATGGGGGGTTATTGACTATTCTGGCGGCTATGTCATCCACCTTTCTTCTGGAATCGCTGGTTTAACTGCTGCTTACTGGGTTGGACCAAGGTTGAAGAGTGACAGGGAGAGGTTTCCACCAAACAACGTGCTACTTATGCTTGCTGGTGCTGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAACGGTGGAGCACCATATGCTGCAAACATTGCATCTTCAATTGCGGTGTTGAACACAAACATTTGTGCAGCCACTAGCCTCCTTGTGTGGACAACTTTGGATGTCATTTTCTTTGGGAAACCTTCGGTGATTGGAGCTGTGCAGGGCATGATGACTGGACTTGTATGCATCACCCCAGGAGCAGGGCTTGTGCAATCGTGGGCTGCTATACTGATGGGAATATTATCTGGGAGCATTCCATGGGTGACCATGATGATTTTGCATAAAAAGTCAACCTTGCTACAAAAGGTCAGGGTTTCTTAA
Predicted protein sequences of Glyma18g43540
>Glyma18g43540.1   sequence type=predicted peptide   gene model=Glyma18g43540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPLAYQEHLPAAPSWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGEELLPFWGKGAPALGQKFLTKRAVVNETIHHFHNGTVESPPEEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAILMGILSGSIPWVTMMILHKKSTLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGGGGMQFFKQLVAAMFVIGWNLVSTTIILLVIKLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGSLQSGNTFVSPYVNGARGVTINL*

>Glyma18g43540.2   sequence type=predicted peptide   gene model=Glyma18g43540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPLAYQEHLPAAPSWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGEELLPFWGKGAPALGQKFLTKRAVVNETIHHFHNGTVESPPEEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAILMGILSGSIPWVTMMILHKKSTLLQKVRVS*






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