Glyma18g43520 - SoyBase

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Report for Sequence Feature Glyma18g43520

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53060305
stop:	53064245
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G45616	AT	Annotation by Michelle Graham. TAIR10: receptor like protein 6 \| chr1:17183550-17186534 REVERSE LENGTH=994	SoyBase	E_val: 3.00E-136	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG0472	KOG	Leucine-rich repeat protein	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C6ZRY7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein n=1 Tax=Glycine max RepID=C6ZRY7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZRY7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Disease resistance protein n=1 Tax=Glycine max RepID=C6ZRY7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g43520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g204500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43520

Limit To All Plant Sequences

>Glyma18g43520.2   sequence type=CDS   gene model=Glyma18g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAATTCCCCATGTTCCCTTCCTTTCCTTCATATTCTGCTACTGCTTCTTGATACACCACAGTGTTTACTACACCGGGGTAAAAGCCCAAATTGTTGAGGATCAACAACAATCATTGCTCAAACTGAAGAATAGCCTCAAATTCGAGACTAATAAGTCTACAAAACTTGTGTCTTGGAATCCAAGCGTAGATTTCTGTGAGTGGAGGGGTGTTGCCTGTGACGAGGATGGGCAAGTTACTGGCCTTGACCTGAGTGGAGAATCTATCTATGGTGGATTTGACAATTCAAGTACTCTTTTCAGTTTGCAAAATCTCCAGATACTGAATTTGTCTGCTAATAACTTCAGTTCTGAGATACCATCCGGTTTCAACAAGTTGAAGAACTTAACATATCTGAATTTGTCTCATGCTGGCTTTGTGGGGCAGATTCCAACAGAGATTTCTTACCTGACAAGGTTGGTAACTCTTGATATCTCTTCTGTTTCCTATTTATATGGGCAACCACTGAAACTTGAAAACATAGATCTACAAATGCTTGTCCATAACCTCACCATGCTTAGACAATTGTATATGGATGGTGTAATTGTAACAACTCAGGGATATAAATGGAGCAATGCTTTGTTTAAACTTGTTAACCTGCAGGAGCTGAGCATGTCAGACTGCAATCTCTCTGGACCCCTTGATCCTTCCTTGACAAGACTTCAGAATCTATCAGTCATTCGTCTTCATCAGAACAATTTCTCATCCCCAGTGCCAGAAACCTTTGCTAATTTTCCAAATTTAACCACCCTTGACCTTAGTTCTTGTGAATTGACTGGAACATTTCAAGAGAAAATCTTTCAGGTGGCAACATTGCCTCTTCAGACATTGATTGTGAGTGGCACAAATTTCTCGGGAGCAATACCACCAGCTATAAATAATCTTGGGCAGTTATCCATCTTGGATCTTTCTGATTGCCATTTTAACGGAACACTACCCAGTTCAATGTCAAGACTCAGGGAACTCACTTATCTGGATTTGTCATTTAATGACTTCACTGGTCCAATTCCATCCCTGAATATGTCCAAGAATCTCACGCATTTAGACTTCTCGAGCAATGGTTTCACAGGTTCAATCACATCTTATCATTTTGACGGCCTAAGAAATCTGCTCCAAATTGATTTGCAGGACAACTTCCTGGATGGAAGCCTTCCTTCCTCTCTTTTTTCTCTCCCTCTGCTACGAAGTATTCGACTTTCCAACAACAATTTCCAGGATCAACTGAATAAATTTTCAAATATCTCTTCCTCCAAGTTCGAGATCCTTGATTTAAGTGGAAATGATTTAAACGGGTCCATTCCTACAGATATTTTTCAACTCAGATCACTTATTGTCCTTGAACTATCTTCAAACAAGTTAAATGGCACATTGAAGCTAGATGTGATTCATAGACTTGCAAATCTAATTACACTGGGACTTTCACACAACCATTTGTCAATAGACACAAATTTTGCAGATGTTGGCCTAATATCTTCCATCCCCAATATGTATATTGTAGAGTTGGCCTCCTGCAACCTGACAGAGTTCCCTAGTTTCTTGAGAAACCAATCAAAAATAACAACTTTAGACCTCTCAAGCAACAATATTCAAGGATCTATACCAACATGGATTTGGCAACTTAACTCTCTCGTTCAATTAAATCTTTCTCACAATTTACTCAGCAATTTAGAAGGACCTGTGCAGAACTCTAGTTCCAATTTGAGGCTCCTTGACCTTCATGATAATCACCTCCAAGGGAAGCTTCAAATATTTCCGGTGCATGCCACTTATTTGGACTATTCAAGCAATAACTTCAGTTTCACTATTCCATCAGATATTGGTAATTTTCTGTCTGACACAATTTTCCTGTCTCTTTCCAAAAACAATTTATCTGGGAATATTCCACAATCCTTGTGCAATAGTTCAAATATGCTAGTTCTGGATTTTTCCTATAATCACTTGAATGGGAAAATTCCAGAGTGCTTAACACAGAGTGAGAGACTTGTGGTATTAAATCTGCAACATAACAAGTTCCATGGCAGCATTCCAGACAAATTTCCAGTATCTTGTGTTCTAAGTTCTCTGGATCTTAATAGTAATCTATTGTGGGGCTCAATTCCCAAATCTCTTGCAAATTGCACATCATTAGAGGTGTTGGATCTTGGTAACAATCAGGTAGATGATGGATTTCCATGCTTCTTAAAGACAATATCTACACTACGTGTCATGTACTGGCATGTGCTTCAAATTGTTGATCTAGCTTTCAACAATTTCAGTGGTGTACTTCCAAAAAACTGCTTCAAAACTTGGAAGGCAATGATGCTTGATGAAGATGATGATGGATCACAGTTCAATTACATTGGATCTCAAGTCCTTAAGTTTGGTGGTATATATTATCAGGATTCTGTGACACTTACAAGCAAAGGTTTACGGATGGAGTTTGTTAAAATCCTAACTGTCTTAACATCTGTTGACTTCTCATCCAACAATTTTGAAGGAACTATACCAGAAGAGCTTATGAATTTTACAAGACTTCATTTGCTCAACTTGTCAGATAATGCTTTAGCAGGCCATATCCCTTCATCTATAGGGAATCTAAAACAGCTTGAATCATTGGACCTGTCAAGCAACCATTTTGATGGAGAAATTCCCACACAGCTTGCAAATTTAAATTTCCTCTCGTACCTAAACGTTTCCTCTAATTGTCTGGCGGGAAAAATCCCCGGAGGTAACCAGCTTCAAACATTTGATGCATCTTCCTTTGTTGGTAATGCAGAATTGTGTGGAGCACCTTTGATTAAAAACTGCAGTAATGAAACATATGGGCTGCCAACGTCACCACATGCAAGGCGATGCACATTTGGCTGGAATATCATGAGGGTTGAATTGGGATTTGTTTTTGGCCTTGCACTTGTTATTGGTCCCCTTCTGTTTTGGAAGCAATGGAGGCAATGGTACTGGAAACGCGTGGACCTCATTCTGTGTCGTGTCTTCCCACAGCTGAATCTTGAATATGAAAGCAGTGGAGGACATTGCTATCAAGTTTTAAGGTGGAGGCATTAG

Predicted protein sequences of Glyma18g43520

Limit To All Plant Sequences

>Glyma18g43520.2   sequence type=predicted peptide   gene model=Glyma18g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIPHVPFLSFIFCYCFLIHHSVYYTGVKAQIVEDQQQSLLKLKNSLKFETNKSTKLVSWNPSVDFCEWRGVACDEDGQVTGLDLSGESIYGGFDNSSTLFSLQNLQILNLSANNFSSEIPSGFNKLKNLTYLNLSHAGFVGQIPTEISYLTRLVTLDISSVSYLYGQPLKLENIDLQMLVHNLTMLRQLYMDGVIVTTQGYKWSNALFKLVNLQELSMSDCNLSGPLDPSLTRLQNLSVIRLHQNNFSSPVPETFANFPNLTTLDLSSCELTGTFQEKIFQVATLPLQTLIVSGTNFSGAIPPAINNLGQLSILDLSDCHFNGTLPSSMSRLRELTYLDLSFNDFTGPIPSLNMSKNLTHLDFSSNGFTGSITSYHFDGLRNLLQIDLQDNFLDGSLPSSLFSLPLLRSIRLSNNNFQDQLNKFSNISSSKFEILDLSGNDLNGSIPTDIFQLRSLIVLELSSNKLNGTLKLDVIHRLANLITLGLSHNHLSIDTNFADVGLISSIPNMYIVELASCNLTEFPSFLRNQSKITTLDLSSNNIQGSIPTWIWQLNSLVQLNLSHNLLSNLEGPVQNSSSNLRLLDLHDNHLQGKLQIFPVHATYLDYSSNNFSFTIPSDIGNFLSDTIFLSLSKNNLSGNIPQSLCNSSNMLVLDFSYNHLNGKIPECLTQSERLVVLNLQHNKFHGSIPDKFPVSCVLSSLDLNSNLLWGSIPKSLANCTSLEVLDLGNNQVDDGFPCFLKTISTLRVMYWHVLQIVDLAFNNFSGVLPKNCFKTWKAMMLDEDDDGSQFNYIGSQVLKFGGIYYQDSVTLTSKGLRMEFVKILTVLTSVDFSSNNFEGTIPEELMNFTRLHLLNLSDNALAGHIPSSIGNLKQLESLDLSSNHFDGEIPTQLANLNFLSYLNVSSNCLAGKIPGGNQLQTFDASSFVGNAELCGAPLIKNCSNETYGLPTSPHARRCTFGWNIMRVELGFVFGLALVIGPLLFWKQWRQWYWKRVDLILCRVFPQLNLEYESSGGHCYQVLRWRH*

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