Glyma18g43460 - SoyBase

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Report for Sequence Feature Glyma18g43460

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52983821
stop:	52987086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54960	AT	Annotation by Michelle Graham. TAIR10: pyruvate decarboxylase-2 \| chr5:22310858-22312681 REVERSE LENGTH=607	SoyBase	E_val: 0	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004737	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate decarboxylase activity	SoyBase	N/A	ISS
GO:0016831	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity	SoyBase	N/A	ISS
GO:0030976	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding	SoyBase	N/A	ISS
KOG1184	KOG	Thiamine pyrophosphate-requiring enzyme	JGI		ISS
PTHR18968	Panther	THIAMINE PYROPHOSPHATE ENZYMES	JGI		ISS
PTHR18968:SF4	Panther	2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE	JGI		ISS
PF00205	PFAM	Thiamine pyrophosphate enzyme, central domain	JGI		ISS
PF02775	PFAM	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	JGI		ISS
PF02776	PFAM	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	JGI		ISS
UniRef100_Q84V95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0001BA7922	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA7922 related cluster n=1 Tax=unknown RepID=UPI0001BA7922	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43460

Paralog	Evidence	Comments
Glyma07g18570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g204200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43460

Limit To All Plant Sequences

>Glyma18g43460.1   sequence type=CDS   gene model=Glyma18g43460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACCAAGATAGGTTCACTAGACGCGCCCAAGCCCAACAGCAACGACGTCGTATCATGCAACCTCACCAGCAGCGCCGCCATCCAGCCCTGCTTGCCGGCGACGGTGATCAACGGCGCCGGCTGTAGTGACTCCACCTTGGGCGGCCACCTGGCCCGCCGGCTGGTGGAAATCGGCGTCACCGACGTGTTCTCCGTTCCCGGGGACTTCAACCTGACGCTGCTGGACCACCTCATCGCGGAGCCGGCGCTGCACCTGGTCGGGTGCTGCAACGAGCTCAACGCCGGGTACGCCGCCGACGGCTACGCGCGCGCCAGGGGAGTCGGCGCGTGCGTGGTGACGTTCACCGTCGGCGGCCTCAGCGTGCTCAACGCCATCGCCGGAGCGTACAGCGAGAACTTGCCGCTAATTTGCATCGTCGGTGGGCCCAACTCCAACGACTACGGCACCAGTCGGATCCTCCATCACACCATCGGGTTACCCGATTTCAGCCAGGAGCTAAGGTGCTTTCAGACCATTACTTGCTTCCAGGCTGTGGTGAATAACTTGGAAGATGCTCATGAGTTGATTGATACAGCAATCTCAACTGCGCTGAAAGAAAGCAAACCTGTGTATATAAGCATTAGCTGTAACTTGCCTGGGATTCCTCACCCCACTTTCAGTCGTGACCCTGTTCGTTTTTCATTGTCTCCAAGATTGAGTAATAAGATGGGGTTGGAGGCCGCAGTGGAGGCAGCGGCGGAATTCCTTAACAAGGCAGTGAAACCAGTGCTGGTAGGTGGTCCTAAACTGAGGGTGGCAACAGCATCTGATGCCTTTGTCGAACTGGCTGATGCGTGTGGTTATGCGCTTGCTGTGATGCCGTCGGCTAAAGGGCAGGTTCCAGAGCACCATCCCCATTTTATCGGAACTTATTGGGGTGCTGTGAGCACTGCCTTCTGTGCTGAGATTGTGGAGTCTGCGGATGCATACTTGTTTGCTGGTCCAATTTTTAATGACTACAGCTCTGTGGGGTATTCACTTCTTCTCAAGAAGGAGAAGGCGATCATTGTGCAGCCTGATCGGGTTGTGATCGCGAATGGACCTGCTTTTGGGTGTGTGCTGATGAAGGATTTCCTCAAGGCACTCGCAAAGCGCCTCAAGCACAACAATACTGCATATGAAAATTACCACAGGATATTTGTCCCTGATGGGCATCCTTTGAAGGCTGCACCCAGAGAGCCTTTGAGGGTTAATGTTCTGTTCCAACATATACAAAATATGCTGTCTGGTGAAACTGCTGTAATTGCTGAGACAGGGGACTCCTGGTTTAATTGCCAAAAGCTGAAATTGCCAAAGGCATGTGGGTATGAGTTCCAAATGCAATATGGTTCAATTGGATGGTCTGTTGGTGCTACTCTGGGTTATGCTCAAGCCGTTCCTGAGAAGCGAGTGATTGCCTGCATTGGTGATGGAAGTTTTCAGGTGACTGCCCAAGATGTATCGACAATGTTACGGTGCGGGCAAAAAACCATCATCTTTCTGATCAACAATGGTGGATACACCATCGAGGTTGAAATTCATGATGGGCCGTACAATGTGATTAAGAACTGGAATTACACTGGGTTGATTGATGCAATCCACAATGGTGAAGGGAAATGCTGGACTGCCAAGGTGTTCTGTGAAGAGGAGCTAGTTGAAGCAATTGCCACAGCCACAGGACCCAAGAAAGACTCCTTATGCTTCATTGAGGTGATTGTTCATAAGGATGACACCAGTAAAGAATTGCTTGAATGGGGCTCAAGGGTTTCTGCTGCCAATAGCCGTCCTCCCAATCCTCAGTAA

Predicted protein sequences of Glyma18g43460

Limit To All Plant Sequences

>Glyma18g43460.1   sequence type=predicted peptide   gene model=Glyma18g43460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTKIGSLDAPKPNSNDVVSCNLTSSAAIQPCLPATVINGAGCSDSTLGGHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPALHLVGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTSRILHHTIGLPDFSQELRCFQTITCFQAVVNNLEDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFSRDPVRFSLSPRLSNKMGLEAAVEAAAEFLNKAVKPVLVGGPKLRVATASDAFVELADACGYALAVMPSAKGQVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIANGPAFGCVLMKDFLKALAKRLKHNNTAYENYHRIFVPDGHPLKAAPREPLRVNVLFQHIQNMLSGETAVIAETGDSWFNCQKLKLPKACGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIDAIHNGEGKCWTAKVFCEEELVEAIATATGPKKDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ*

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