Glyma18g43420 - SoyBase

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Report for Sequence Feature Glyma18g43420

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52920767
stop:	52944729
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08960	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr3:2730405-2736762 REVERSE LENGTH=1010	SoyBase	E_val: 0	ISS
GO:0000059	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, docking	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005643	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG1993	KOG	Nuclear transport receptor KAP120 (importin beta superfamily)	JGI		ISS
PTHR10997	Panther	IMPORTIN (RAN-BINDING PROTEIN)	JGI		ISS
PTHR10997:SF7	Panther	gb def: hypothetical protein [arabidopsis thaliana]	JGI		ISS
PF03810	PFAM	Importin-beta N-terminal domain	JGI		ISS
UniRef100_B9SWY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Importin, putative n=1 Tax=Ricinus communis RepID=B9SWY3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F400	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F400 related cluster n=1 Tax=unknown RepID=UPI000233F400	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43420

Paralog	Evidence	Comments
Glyma07g18530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g203900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43420

Limit To All Plant Sequences

>Glyma18g43420.2   sequence type=CDS   gene model=Glyma18g43420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTTTCGGCTTCCGACGTGGCAGCGATGTACTCGCTGCTTTCGAATTCCATGAGCGCCGATCACCGCCTCCGCGGTCCGGCGGAGGACGCGCTTGCGCAATCGGAGTCCAGGCCTGGCTTCTGCTCCTGCCTCCTCGAAGTGATTACCGCGAAGGATTTGGCGTCGCAAACGGATGTGCGCATGATGGCCACCGTCTATTTCAAGAACAGCGTCAACCGCTACTGGCGCCACCGCCGCGATTCCTCGGGAATTAGCAATGAAGAGAAAATGCACCTGAGGCAGAAGTTGTTGATGTACTCGAGAGAAGAGAATGATCAGATAGCTCTGATGCTGGCGGTGCTCATCTCCAAAATCGCTCGCATTGATTATCCCAAAGAATGGCCAGATATCTTTTTGGTTTTATCACAACAACTTCAATCAGCAAATGTTCTTGCCTCCCATCGAATCTTTTTGATTTTATTTAGGACCTTAAAGGAGTTGTCCACAAAACGCCTTACATCAGACCAACGCAACTTTGCAGAGATATCATCCCATTTCTTTGATTATAGCTGGCGCCTTTGGCAAAGTGATGTGCAGACAATACTGCATGGTTTCTCGTCTCTTTCTCGAAGCTGTAATTTGAATGCTGAAGATCAGCCTCATGAACTTTATCTTACATGTGAGAGATGGCTGTTATGTTCGAAGATTGTTCGGCAATTAATTATTTCAGGATTTCAAAGTGATTCAAAGTGTTTTCAGGAGGTTCGGCCAGTCAAGGAAGTCTCACCTGTGCTCTTGAGTGCCATTCAATCACTCCTTCCATACTATTCGTCTTTTCAAAAGCAATATCCTAAATTTTGGGACTTTGTAAAGAGGGCATGTACCAAGTTGATGAAAATTTTAGTTGCCTTTCAGGGCAGACATCCGTACTCATTTGGTGATAAATTTGTGCTTTCATCCGTCTTGGACTTCTGTTTGAATAGGATAACAGATCCTGAGCCATATCTGTTGTCATTTGAGCAATTTCTCATTCAGTGTATGGTGATGATTAAAAATATTCTGGAATGTAAGGAGTACAAGCCAAGTCTTACTGGTAGGGTGATGGATGAAAATGGAGTTACACTGGAGCTGATGAAGAAAAACATTTCCAGTGCTGTTGGTGGTGTTTTAACTTCCCTTCTTCCCACTGAACGGATAGTCCACTTGTGTAATGTATTGATATCGAGGTATTTTGTTCTGACAGCAAGTGATTTGGAAGAGTGGTATCGTAACCCCGAGTCTTTTCACCATGAGCAGGATATGGTTCAGTGGACAGAAAAATTGAGGCCATGTGCTGAAGCTTTGTACATTGTATTATTTGAAACTAATAGCCAATTGCTAGGTCCTGTTGTGGTCTCTCTTCTTCAAGAGTCTATGAATAATTGCCCAACTCCAGTGACGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTATCTGAGTTTTAAAGACTGGTTTAATGGTGCTTTATCACTCGAACTCTCAAATGAACATCCAAATTTGCGTATCATTCATCGTAAAGTTGCTGTAATTTTGGGGCAGTGGGTTTCTGAGATCAAAGATGATACAAAAAGGCCTGTATACTGTGCATTAATCAGATTGTTACAGGGCAAAGATTTATCTGTCCGGCTGGCAGCATGTCGATCCCTATGTTTGCATATCGAAGATGCAAACTTTTCGGAAAGGGAGTTTGTTGATCTTCTTCCTATTTGTTGGGATTCATGTTTTAAGTTGTTCGAGGAAGTTCAGGAATTCGATTCAAAGGTTCAGATTTTGAATTTGATCTCTATCCTCATCGGACATGTTAGTGAAGTTATTCCATTTGCAAACAAGTTGGTGCAATTTTTTCAGAAGGTCTGGGAGGAGTCTTCTGGTGAAAGTCTGCTGCAGATACAGCTTCTTGTTGCTCTGAGGAACTTTGTGGTTGCTCTTGGTTACCAGTCACCCATTTGCTACAATATACTACTGCCAATTCTGGAGAATGGGATTGATATTAATAGTCCAGATGAACTCAATCTCCTAGAAGATAGCATGCTGTTATGGGAGGCCACACTTTCTCATGCTCCATCAATGGTGCCTCAATTGTTACAATATTTTTCACGCCTTGTGGAGATAATGGAAAGAAATTTTGACCATTTGCAGGTTGCTGTGAACATAATTGAAGATTACATAATTTTGGGTGGAAATAACTTTCTGAGCATGCATGCAACAAATATTGCTAAAATTCTTGATTTAGTTATTGGAAATGTCAACGACAAAGGCATTCTTTCAGTTCTTCCTGTGGTTGATATCTTAATACAGTGTTTCCCCATGGATGTGCCGCCACTTATTAGCAGTACTTTACAAAAGTTAATAGTAATATGTTTGAGTGGAGGAGATGATCACGATCCTTCTAAAACATCTGTTAAAGCATCTTCGGCTGCCATCCTGGCTAGGCTTTTGGTGATGAATACAAATTCACTTGCCCAATTAGCATCAGATCCATCAACTTCTCAACTGCTTCAGACAGCATCCATCCCAGTTCAAGAAAATATACTTCTTTGTCTGGTTGACATTTGGGTTGATAAGGTAGATAATGTTTCTTCCATCCAGAAGAAGACAATTGGCTTAGCCCTCTCAATAATTCTGACGTTAAGACTGCCTCAAGTACTGGACAAACTGGATCAAATTTTGAGTGTTTGCACTAGTGTAATTCTGGGCAGAAATGATGACTTAACTGAGGAAGAGTCCAGTGGTGACATAAGCTCCAGCACGTCTCCTGATGAGGGCACTATTCCTAGTAAAGAATTCAGAAAAAGACAGATCAAATTTTCAGACCGTATCAATCAGCTGTCTCTTGAGGACTGTGTGAGAGAAAATCTACAAACATGTGCTGCTATTCATGGAGAATCATTCAATGCTGCAATGAGCAGTATGCATCCATCTGCGTTTGCACAATTGAAGCAGGCGTTAAAGATGACATAA

Predicted protein sequences of Glyma18g43420

Limit To All Plant Sequences

>Glyma18g43420.2   sequence type=predicted peptide   gene model=Glyma18g43420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSASDVAAMYSLLSNSMSADHRLRGPAEDALAQSESRPGFCSCLLEVITAKDLASQTDVRMMATVYFKNSVNRYWRHRRDSSGISNEEKMHLRQKLLMYSREENDQIALMLAVLISKIARIDYPKEWPDIFLVLSQQLQSANVLASHRIFLILFRTLKELSTKRLTSDQRNFAEISSHFFDYSWRLWQSDVQTILHGFSSLSRSCNLNAEDQPHELYLTCERWLLCSKIVRQLIISGFQSDSKCFQEVRPVKEVSPVLLSAIQSLLPYYSSFQKQYPKFWDFVKRACTKLMKILVAFQGRHPYSFGDKFVLSSVLDFCLNRITDPEPYLLSFEQFLIQCMVMIKNILECKEYKPSLTGRVMDENGVTLELMKKNISSAVGGVLTSLLPTERIVHLCNVLISRYFVLTASDLEEWYRNPESFHHEQDMVQWTEKLRPCAEALYIVLFETNSQLLGPVVVSLLQESMNNCPTPVTEITPALLLKDAAYGATAYVYYELSNYLSFKDWFNGALSLELSNEHPNLRIIHRKVAVILGQWVSEIKDDTKRPVYCALIRLLQGKDLSVRLAACRSLCLHIEDANFSEREFVDLLPICWDSCFKLFEEVQEFDSKVQILNLISILIGHVSEVIPFANKLVQFFQKVWEESSGESLLQIQLLVALRNFVVALGYQSPICYNILLPILENGIDINSPDELNLLEDSMLLWEATLSHAPSMVPQLLQYFSRLVEIMERNFDHLQVAVNIIEDYIILGGNNFLSMHATNIAKILDLVIGNVNDKGILSVLPVVDILIQCFPMDVPPLISSTLQKLIVICLSGGDDHDPSKTSVKASSAAILARLLVMNTNSLAQLASDPSTSQLLQTASIPVQENILLCLVDIWVDKVDNVSSIQKKTIGLALSIILTLRLPQVLDKLDQILSVCTSVILGRNDDLTEEESSGDISSSTSPDEGTIPSKEFRKRQIKFSDRINQLSLEDCVRENLQTCAAIHGESFNAAMSSMHPSAFAQLKQALKMT*

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