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Report for Sequence Feature Glyma18g43390

Feature Type:gene_model
Chromosome:Gm18
Start:52905745
stop:52910240
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51800AT Annotation by Michelle Graham. TAIR10: metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=385 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006164GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009987GO-bp Annotation by Michelle Graham. GO Biological Process: cellular process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004177GO-mf Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity SoyBaseN/AISS
GO:0008235GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity SoyBaseN/AISS
KOG2776 KOG Metallopeptidase JGI ISS
PTHR10804Panther PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) JGI ISS
PTHR10804:SF11Panther XAA-PRO AMINOPEPTIDASE JGI ISS
PF00557PFAM Metallopeptidase family M24 JGI ISS
UniRef100_A0EVX1UniRef Annotation by Michelle Graham. Most informative UniRef hit: EBP1 n=1 Tax=Ammopiptanthus mongolicus RepID=A0EVX1_9FABA SoyBaseE_val: 0ISS
UniRef100_C6TCX5UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TCX5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g43390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43390
ParalogEvidenceComments
Glyma07g18500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g203800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g43390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g43390
>Glyma18g43390.2   sequence type=transcript   gene model=Glyma18g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGTTTGTACTCTTGCAACGAAAATGAAAACTCCTATATAAGCCAAAGCTGCCTGTGGCTGTAACCCTAGTTGCACAGGAGCACCGTTTGGCTCTACAAGTCTTTCCTTTTCTATTTAATTCCTAAAATCCCATTCTTCTTCGCTCATTCCTCTGCACTGCCATCATCCCCAACTTCCTCACAAGGTTACAAGGACTAAAGAGTTGTGCCACCATGTCGGACGATGAAAGGGAGGAGAAAGAGTTGGATCTCTCTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACAAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTAGAGAGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCAACATGTTTATCAATCAACAACGTTGTCTGCCATTTCTCTCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAATTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCATGTTCTTCAGGAAGGTCCTGTTACTGGAAGGGCAGCTGATGTCATTGCTGCTGCTAATACTGCTGCTGAGGTGGCCTTGAGGCTTGTCAGGCCGGGAAAGAAGAACAAGGATGTAAGTGATGCAATTCAAAAGGTTGCTGCTGCCTATGACTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGTTGTGCTTAGTTTGTCTAATCCAGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAGCCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAGGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGGTAAAAAACTTTTGCCCAGTAGGCATAATTAAATCCTGTGTTGTCATTTATGTGCGCCTTCATGTCAT

>Glyma18g43390.3   sequence type=transcript   gene model=Glyma18g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGTTTGTACTCTTGCAACGAAAATGAAAACTCCTATATAAGCCAAAGCTGCCTGTGGCTGTAACCCTAGTTGCACAGGAGCACCGTTTGGCTCTACAAGTCTTTCCTTTTCTATTTAATTCCTAAAATCCCATTCTTCTTCGCTCATTCCTCTGCACTGCCATCATCCCCAACTTCCTCACAAGGTTACAAGGACTAAAGAGTTGTGCCACCATGTCGGACGATGAAAGGGAGGAGAAAGAGTTGGATCTCTCTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACAAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTAGAGAGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCAACATGTTTATCAATCAACAACGTTGTCTGCCATTTCTCTCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAATTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCATGTTCTTCAGGAAGGTCCTGTTACTGGAAGGGCAGCTGATGTCATTGCTGCTGCTAATACTGCTGCTGAGGTGGCCTTGAGGCTTGTCAGGCCGGGAAAGAAGAACAAGGATGTAAGTGATGCAATTCAAAAGGTTGCTGCTGCCTATGACTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGTTGTGCTTAGTTTGTCTAATCCAGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAGGTAGGTCAATTATATTAACATGTATACTAGTATGGTAGAGCTTATGCATGATAAAAAGTAAATTTTCATTC
Coding sequences of Glyma18g43390
>Glyma18g43390.1   sequence type=CDS   gene model=Glyma18g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGACGATGAAAGGGAGGAGAAAGAGTTGGATCTCTCTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACAAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTAGAGAGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCAACATGTTTATCAATCAACAACGTTGTCTGCCATTTCTCTCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAATTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCATGTTCTTCAGGAAGGTCCTGTTACTGGAAGGGCAGCTGATGTCATTGCTGCTGCTAATACTGCTGCTGAGGTGGCCTTGAGGCTTGTCAGGCCGGGAAAGAAGAACAAGGATGTAAGTGATGCAATTCAAAAGGTTGCTGCTGCCTATGACTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGTTGTGCTTAGTTTGTCTAATCCAGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAGCCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAGGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGGTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGATCGGATCGAATCACAACTCATCCACTCCAAGAATTGCAGCCCACAAAAACAATAGATGATCCTGATATTAAGGCCTGGCTAGCCTTGGGCACAAAGACAAAGAAGAAAGGTGGTGGAAAGAAGAAAAAAGGTAAGAAAGGGGAGAAGGCAGATGAGTCAGCTGAAGCTGAGCCTATGGACTCAACAAACGAGGCCACTCCTCAAGAGTGA

>Glyma18g43390.2   sequence type=CDS   gene model=Glyma18g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGACGATGAAAGGGAGGAGAAAGAGTTGGATCTCTCTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACAAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTAGAGAGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCAACATGTTTATCAATCAACAACGTTGTCTGCCATTTCTCTCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAATTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCATGTTCTTCAGGAAGGTCCTGTTACTGGAAGGGCAGCTGATGTCATTGCTGCTGCTAATACTGCTGCTGAGGTGGCCTTGAGGCTTGTCAGGCCGGGAAAGAAGAACAAGGATGTAAGTGATGCAATTCAAAAGGTTGCTGCTGCCTATGACTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGTTGTGCTTAGTTTGTCTAATCCAGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAGCCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAGGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGGTAAAAAACTTTTGCCCAGTAGGCATAATTAA

>Glyma18g43390.3   sequence type=CDS   gene model=Glyma18g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGACGATGAAAGGGAGGAGAAAGAGTTGGATCTCTCTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACAAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTAGAGAGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCAACATGTTTATCAATCAACAACGTTGTCTGCCATTTCTCTCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAATTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCATGTTCTTCAGGAAGGTCCTGTTACTGGAAGGGCAGCTGATGTCATTGCTGCTGCTAATACTGCTGCTGAGGTGGCCTTGAGGCTTGTCAGGCCGGGAAAGAAGAACAAGGATGTAAGTGATGCAATTCAAAAGGTTGCTGCTGCCTATGACTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGTTGTGCTTAGTTTGTCTAATCCAGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAGGTAGGTCAATTATATTAA
Predicted protein sequences of Glyma18g43390
>Glyma18g43390.1   sequence type=predicted peptide   gene model=Glyma18g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDEREEKELDLSSAEVVTKYKTAAEIVNKALKLVISECKPKAKIVDICEKGDSYIREQTGNVYKNVKRKIERGVAFPTCLSINNVVCHFSPLASDEAVLEEGDILKIDMACHIDGFIAVVAHTHVLQEGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVSDAIQKVAAAYDCKIVEGVLSHQMKQFVIDGNKVVLSLSNPDTRVDEAEFEENEVYAIDIVTSTGDGKPKLLDEKQTTIYKRAVDKSYHLKMKASRFIFSEISQKFPIMPFSARALEEKRARLGLVECVNHELLQPYPVLHEKPGDFVAHIKFTVLLMPNGSDRITTHPLQELQPTKTIDDPDIKAWLALGTKTKKKGGGKKKKGKKGEKADESAEAEPMDSTNEATPQE*

>Glyma18g43390.2   sequence type=predicted peptide   gene model=Glyma18g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDEREEKELDLSSAEVVTKYKTAAEIVNKALKLVISECKPKAKIVDICEKGDSYIREQTGNVYKNVKRKIERGVAFPTCLSINNVVCHFSPLASDEAVLEEGDILKIDMACHIDGFIAVVAHTHVLQEGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVSDAIQKVAAAYDCKIVEGVLSHQMKQFVIDGNKVVLSLSNPDTRVDEAEFEENEVYAIDIVTSTGDGKPKLLDEKQTTIYKRAVDKSYHLKMKASRFIFSEISQKFPIMPFSARALEEKRARLGLVECVNHELLQPYPVLHEKPGKKLLPSRHN*

>Glyma18g43390.3   sequence type=predicted peptide   gene model=Glyma18g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDEREEKELDLSSAEVVTKYKTAAEIVNKALKLVISECKPKAKIVDICEKGDSYIREQTGNVYKNVKRKIERGVAFPTCLSINNVVCHFSPLASDEAVLEEGDILKIDMACHIDGFIAVVAHTHVLQEGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVSDAIQKVAAAYDCKIVEGVLSHQMKQFVIDGNKVVLSLSNPDTRVDEAEFEENEVYAIDIVTSTGDGKVGQLY*






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