SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g43370

Feature Type:gene_model
Chromosome:Gm18
Start:52858169
stop:52860269
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51800AT Annotation by Michelle Graham. TAIR10: metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=385 SoyBaseE_val: 7.00E-39ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006164GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009987GO-bp Annotation by Michelle Graham. GO Biological Process: cellular process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004177GO-mf Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity SoyBaseN/AISS
GO:0008235GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity SoyBaseN/AISS
PTHR10804Panther PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) JGI ISS
PTHR10804:SF11Panther XAA-PRO AMINOPEPTIDASE JGI ISS
PF00557PFAM Metallopeptidase family M24 JGI ISS
UniRef100_A0EVX1UniRef Annotation by Michelle Graham. Most informative UniRef hit: EBP1 n=1 Tax=Ammopiptanthus mongolicus RepID=A0EVX1_9FABA SoyBaseE_val: 3.00E-53ISS
UniRef100_UPI000233E6C8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E6C8 related cluster n=1 Tax=unknown RepID=UPI000233E6C8 SoyBaseE_val: 6.00E-84ISS

Expression Patterns of Glyma18g43370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g43370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g43370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g43370
>Glyma18g43370.1   sequence type=CDS   gene model=Glyma18g43370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGACGATGAAAGGGAGGAGAAAGAGTTGGATCTCTCTTCTGCCGAAGTTGTCACCAAATACAAAACCACTGCTGAGATCGTTAACAGTGTTAAGCTTATAATATTCATAAATGAAGGAGCATTGCCTGTTCTTAACATATATCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGATGTGTTGCTTTCCCAACATGTTTATCTGTAAACAGCGTTGTCTGCCATTTCTCTCCAATGGAGTCAGTGGTTTCTGCTATTATTCTGAAGTTGATGTTTGTTTCTTTGGTTGGTTGCAGTGATATGGCATGCCATATAGATGGATTCATCACTGCGGTAGCTCACACCCATGTTCTTCAGGAAGGTCCTGTTGCTGCCACAAATACTGCTGCTGAGGTGGCCTTGAGGCTTGTCAGGCCGGGAAAGAAGGTTTTGATGCTTTCTCTAGAGAGGCAACAACCTTAA
Predicted protein sequences of Glyma18g43370
>Glyma18g43370.1   sequence type=predicted peptide   gene model=Glyma18g43370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDEREEKELDLSSAEVVTKYKTTAEIVNSVKLIIFINEGALPVLNIYQTGNVYKNVKRKIERCVAFPTCLSVNSVVCHFSPMESVVSAIILKLMFVSLVGCSDMACHIDGFITAVAHTHVLQEGPVAATNTAAEVALRLVRPGKKVLMLSLERQQP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo