Report for Sequence Feature Glyma18g43300
Feature Type: gene_model
Chromosome: Gm18
Start: 52740832
stop: 52745114
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g43300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G08950 AT
Annotation by Michelle Graham. TAIR10: electron transport SCO1/SenC family protein | chr3:2727285-2729289 FORWARD LENGTH=334
SoyBase E_val: 1.00E-107 ISS
GO:0006626 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion
SoyBase N/A ISS
GO:0006825 GO-bp
Annotation by Michelle Graham. GO Biological Process: copper ion transport
SoyBase N/A ISS
GO:0006878 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular copper ion homeostasis
SoyBase N/A ISS
GO:0008535 GO-bp
Annotation by Michelle Graham. GO Biological Process: respiratory chain complex IV assembly
SoyBase N/A ISS
GO:0009790 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development
SoyBase N/A ISS
GO:0019243 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate
SoyBase N/A ISS
GO:0033617 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitochondrial respiratory chain complex IV assembly
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005507 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion binding
SoyBase N/A ISS
KOG2792
KOG
Putative cytochrome C oxidase assembly protein
JGI ISS
PTHR12151 Panther
SCO1/SENC
JGI ISS
PF02630 PFAM
SCO1/SenC
JGI ISS
UniRef100_Q8VYP0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein SCO1 homolog 1, mitochondrial n=1 Tax=Arabidopsis thaliana RepID=SCO11_ARATH
SoyBase E_val: 7.00E-105 ISS
UniRef100_UPI000233F3FC UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F3FC related cluster n=1 Tax=unknown RepID=UPI000233F3FC
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g43300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g43300
Paralog Evidence Comments
Glyma07g18460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma16g19320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g43300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g203300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g43300
Coding sequences of Glyma18g43300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g43300.2 sequence type=CDS gene model=Glyma18g43300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATCCATCGTATCCACCAAAGCCAACCAATTTCGCTATTCCACGCGCCTTCTCTTCTCACACCTTCTTCGCCAAGGCAGACCCTCCACGCTTTCACCACCCTTCTCTTCTCATCTTCAACCACTCCATCACCCTTACAAGGTTCGGAATCAAAGTTATGGAAATGGGTCGTTGAGGTTGTGTCAAAGGTTTCTATCTTCTTCTTCTTCTCCTCCTGCTGCTAATGTTAGTGGAGAAAAACCAGCATCAGATTCAGATCACTCTGCAAAAGATGGTTCTGGCCAAGGGAAAGAGTCTGGGAGTGGAGGAGATGAGGGTCAGAAAAGTGATGCTGGGAAATCCGTTCGTGGAGGGCCTGTTTCTTGGTTGAGCTTTCTCTTGCTGGTGCTCACTGGAGCTGGATTGGTAGATTACTATGGTGAGTTTAGTTTTTTGTGGTTAGGAATGTGGGGGATACGTTCTAATACAGAGGCTGTTAAGCAGGGACCTTCTGTAGGAACAGCTGCAATTGGGGGATTCTTGGGAAAGTGGACTTTGTTATATTTTGGCTTTACTCACTGCCCAGATATCTGTCCAGAGGAACTACAGAAGTTAGCAGCTGCTGTTGATAAAATAAAGGAGAAAGCTGGAATTGAAACTGTACCGGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTGGGTGAATATGTCAAAGAATTTCATCCAAAGTTAATTGGATTAACTGGTAGCCCAGATGAGATCAAGAATGTTGCTCGTGCATATCGTGTTTATTACATGAAGACAGCAGAGGAAGACTCAGATTATCTTGTTGATCACTCCATAGTTATATACTTGATGAGTCCTGAAATGAAATTTGTAAAGTTTTTTGGCAAGAACAATGATGTTGATTCGCTTGCCGATGGAGTTATTAAAGAGGTAAAGCAGTATAAGAAGTAA
Predicted protein sequences of Glyma18g43300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g43300.2 sequence type=predicted peptide gene model=Glyma18g43300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASIVSTKANQFRYSTRLLFSHLLRQGRPSTLSPPFSSHLQPLHHPYKVRNQSYGNGSLRLCQRFLSSSSSPPAANVSGEKPASDSDHSAKDGSGQGKESGSGGDEGQKSDAGKSVRGGPVSWLSFLLLVLTGAGLVDYYGEFSFLWLGMWGIRSNTEAVKQGPSVGTAAIGGFLGKWTLLYFGFTHCPDICPEELQKLAAAVDKIKEKAGIETVPVFISVDPERDTVEQVGEYVKEFHPKLIGLTGSPDEIKNVARAYRVYYMKTAEEDSDYLVDHSIVIYLMSPEMKFVKFFGKNNDVDSLADGVIKEVKQYKK*