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Report for Sequence Feature Glyma18g43300

Feature Type:gene_model
Chromosome:Gm18
Start:52740832
stop:52745114
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08950AT Annotation by Michelle Graham. TAIR10: electron transport SCO1/SenC family protein | chr3:2727285-2729289 FORWARD LENGTH=334 SoyBaseE_val: 1.00E-107ISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0006825GO-bp Annotation by Michelle Graham. GO Biological Process: copper ion transport SoyBaseN/AISS
GO:0006878GO-bp Annotation by Michelle Graham. GO Biological Process: cellular copper ion homeostasis SoyBaseN/AISS
GO:0008535GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory chain complex IV assembly SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0033617GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial respiratory chain complex IV assembly SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
KOG2792 KOG Putative cytochrome C oxidase assembly protein JGI ISS
PTHR12151Panther SCO1/SENC JGI ISS
PF02630PFAM SCO1/SenC JGI ISS
UniRef100_Q8VYP0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein SCO1 homolog 1, mitochondrial n=1 Tax=Arabidopsis thaliana RepID=SCO11_ARATH SoyBaseE_val: 7.00E-105ISS
UniRef100_UPI000233F3FCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F3FC related cluster n=1 Tax=unknown RepID=UPI000233F3FC SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g18460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma16g19320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g203300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g43300.2   sequence type=CDS   gene model=Glyma18g43300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCATCGTATCCACCAAAGCCAACCAATTTCGCTATTCCACGCGCCTTCTCTTCTCACACCTTCTTCGCCAAGGCAGACCCTCCACGCTTTCACCACCCTTCTCTTCTCATCTTCAACCACTCCATCACCCTTACAAGGTTCGGAATCAAAGTTATGGAAATGGGTCGTTGAGGTTGTGTCAAAGGTTTCTATCTTCTTCTTCTTCTCCTCCTGCTGCTAATGTTAGTGGAGAAAAACCAGCATCAGATTCAGATCACTCTGCAAAAGATGGTTCTGGCCAAGGGAAAGAGTCTGGGAGTGGAGGAGATGAGGGTCAGAAAAGTGATGCTGGGAAATCCGTTCGTGGAGGGCCTGTTTCTTGGTTGAGCTTTCTCTTGCTGGTGCTCACTGGAGCTGGATTGGTAGATTACTATGGTGAGTTTAGTTTTTTGTGGTTAGGAATGTGGGGGATACGTTCTAATACAGAGGCTGTTAAGCAGGGACCTTCTGTAGGAACAGCTGCAATTGGGGGATTCTTGGGAAAGTGGACTTTGTTATATTTTGGCTTTACTCACTGCCCAGATATCTGTCCAGAGGAACTACAGAAGTTAGCAGCTGCTGTTGATAAAATAAAGGAGAAAGCTGGAATTGAAACTGTACCGGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTGGGTGAATATGTCAAAGAATTTCATCCAAAGTTAATTGGATTAACTGGTAGCCCAGATGAGATCAAGAATGTTGCTCGTGCATATCGTGTTTATTACATGAAGACAGCAGAGGAAGACTCAGATTATCTTGTTGATCACTCCATAGTTATATACTTGATGAGTCCTGAAATGAAATTTGTAAAGTTTTTTGGCAAGAACAATGATGTTGATTCGCTTGCCGATGGAGTTATTAAAGAGGTAAAGCAGTATAAGAAGTAA

>Glyma18g43300.2   sequence type=predicted peptide   gene model=Glyma18g43300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIVSTKANQFRYSTRLLFSHLLRQGRPSTLSPPFSSHLQPLHHPYKVRNQSYGNGSLRLCQRFLSSSSSPPAANVSGEKPASDSDHSAKDGSGQGKESGSGGDEGQKSDAGKSVRGGPVSWLSFLLLVLTGAGLVDYYGEFSFLWLGMWGIRSNTEAVKQGPSVGTAAIGGFLGKWTLLYFGFTHCPDICPEELQKLAAAVDKIKEKAGIETVPVFISVDPERDTVEQVGEYVKEFHPKLIGLTGSPDEIKNVARAYRVYYMKTAEEDSDYLVDHSIVIYLMSPEMKFVKFFGKNNDVDSLADGVIKEVKQYKK*







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