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Report for Sequence Feature Glyma18g43280

Feature Type:gene_model
Chromosome:Gm18
Start:52719958
stop:52723324
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01360AT Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) | chr5:147608-149316 REVERSE LENGTH=434 SoyBaseE_val: 0ISS
GO:0009827GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0044036GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process SoyBaseN/AISS
GO:0045489GO-bp Annotation by Michelle Graham. GO Biological Process: pectin biosynthetic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
PTHR13533Panther FAMILY NOT NAMED JGI ISS
PTHR13533:SF3Panther gb def: unknown protein [takifugu rubripes] JGI ISS
PF03005PFAM Arabidopsis proteins of unknown function JGI ISS
UniRef100_Q10MX4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10MX4_ORYSJ SoyBaseE_val: 5.00E-150ISS
UniRef100_UPI0001B63B9DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B63B9D related cluster n=1 Tax=unknown RepID=UPI0001B63B9D SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g43280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43280
ParalogEvidenceComments
Glyma07g18440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g203100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g43280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g43280
>Glyma18g43280.1   sequence type=CDS   gene model=Glyma18g43280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCCTTCAGGAATAATGAAGCACCCCAGAGGAAAGCTTCCTCTTCCCATCATTGTCATCACAACCTGTGTTCTTGCTTTTGTGGCTATCTTGTATGTAGAGAGGCTCAGTTTCCTCTCTTCCAAGTCCATTTTCAAGTTCAAGCCATGTCCTAGAAAAACCACCAAACCAAAGACTAGTGACAAAAAAACAGATGAGGAGGTTGTGGTTGTGAATGCATCATCATGGATTGATGACAGGTTTGATTTTGACCCTGAGGAGTGCAATGTTGCAAATGGGAAATGGGTGTTTAACCATTCAATAAAGCCTCTCTACTCAGACATAAGCTGTCCATACATAGATAGACAATTTTCTTGTGTCAAGAATGGGAGGAATGATTCTGACTATCGCCATTGGGAGTGGCAGCCAGAAGATTGCACCTTGCCACGTTTCAACCCAGAGCTTGCCCTCAGAAAGCTTCAAGGGAAAAGGGTGCTATTTGTGGGGGATTCACTGCAAAGAAACCAATGGGAATCTTTTGTCTGCTTGGTAGAATGGGTCATACCTCATAAGCATAAGTCTATGCAACTAGGAAGAGTTCATTCAGTTTTCACAGCCAAGGCTTACAATGCTACTATAGAATTCTATTGGGCCCCATATCTTGTGGAGTCCAACAGTGACATTGACATCATAGATATAAAGAAAAGGATAATAAAAGTGGATGCTATAGCTGAAAGAGCCAAAAACTGGACGGGTGTGGACATCCTTGTTTTTAACACCTATGTATGGTGGATGAGTGGTGTTAGGATTAAAACAATATGGGGTTCATTTGCCAATGGACAAGAAGGGTATGAAGAATTTGACACCCCAGTTGCTTACAAGTTAGCTTTGAAGACGTGGGCCAACTGGATCGACTCAACCATCAATCCAAACAAAACACGAGTCTTTTTCACCACTATGTCACCAACACATACAAGAAGCCAAGACTGGGGCAACATGGAAGGTGTGAAATGCTTCAATGAGACAAAGCCAGTGAGGAAAAAGAAGCACTGGGGAACTGGTTCTGACAAGAGAATAATGAGTGTGGTGGCAAAAGTGGTGAAGAAAATGAAAATTCCAGTGACATTCATCAACATAACACAGATATCAGAATACAGAATTGATGGACATTCATCAGTTTACACTGAAACCGGAGGGAAACTGTTGACTGAAGAGGAAAGGGCTAATCCACAAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCTGATACGTGGAATCAAATACTTTTGGCTATGTTGTAA
Predicted protein sequences of Glyma18g43280
>Glyma18g43280.1   sequence type=predicted peptide   gene model=Glyma18g43280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPSGIMKHPRGKLPLPIIVITTCVLAFVAILYVERLSFLSSKSIFKFKPCPRKTTKPKTSDKKTDEEVVVVNASSWIDDRFDFDPEECNVANGKWVFNHSIKPLYSDISCPYIDRQFSCVKNGRNDSDYRHWEWQPEDCTLPRFNPELALRKLQGKRVLFVGDSLQRNQWESFVCLVEWVIPHKHKSMQLGRVHSVFTAKAYNATIEFYWAPYLVESNSDIDIIDIKKRIIKVDAIAERAKNWTGVDILVFNTYVWWMSGVRIKTIWGSFANGQEGYEEFDTPVAYKLALKTWANWIDSTINPNKTRVFFTTMSPTHTRSQDWGNMEGVKCFNETKPVRKKKHWGTGSDKRIMSVVAKVVKKMKIPVTFINITQISEYRIDGHSSVYTETGGKLLTEEERANPQNADCIHWCLPGVPDTWNQILLAML*






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