Glyma18g43270 - SoyBase

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Report for Sequence Feature Glyma18g43270

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52696782
stop:	52699562
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51830	AT	Annotation by Michelle Graham. TAIR10: SAC domain-containing protein 8 \| chr3:19220237-19225092 FORWARD LENGTH=588	SoyBase	E_val: 8.00E-125	ISS
GO:0032957	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0004439	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	SoyBase	N/A	ISS
GO:0042578	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric ester hydrolase activity	SoyBase	N/A	ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PF02383	PFAM	SacI homology domain	JGI		ISS
UniRef100_B9T1J1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Suppressor of actin, putative n=1 Tax=Ricinus communis RepID=B9T1J1_RICCO	SoyBase	E_val: 6.00E-130	ISS
UniRef100_UPI000233E6C7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E6C7 related cluster n=1 Tax=unknown RepID=UPI000233E6C7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43270

Paralog	Evidence	Comments
Glyma07g18391	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g203000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43270

Limit To All Plant Sequences

>Glyma18g43270.2   sequence type=CDS   gene model=Glyma18g43270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAGAAGAGTAGCTAACCTCGAAGGTGGCACTGCTAATTTCATTGAAACTGAACAATTTCTTGAAAATGAAGAATTCAAGTTCTCATTTTTGCAGCCCAAGATTGTGGAGCATCATTTCCATGATCTCATGCAAAGATATGGAGAGATAGTAGCAATTGATCTTGATAAACATGGTGAAGAAGGTCAATTAAGTGCAGCATATGCTGCTGAAATGCAAAATCAGCAACATGTGAGATATGTGCCTTTTGATTTTCATCACCACTATGGGAGCTCAAACTTTGATAATATGAAAATCCTCTATGATCAAATCTCAGAGGATTTTGAAAAACAGAGATACTTCTTGATAGATAGACAAGGAAATATACTAGAGGAGCAGAGAGGACTTGTCAGATTAAACTACATTGATTCCCTTGATCGAACAAATGTTACTCAGCGTTATCTGGCCCAGAAGTCATTAAATATTCAGTTGCAGAGGATTGAACTCTATTTATTTTATTTAGTGTGGGCAGAACAAGGTGATGAGATAAGTCTCGAGTATGCTAGGACTCATGCACTCAAAGGGGACTTAGTTAGATATGGGAAACAAACAATAACTAGAATGATTAAAGATGGGGTGAGTGCACTTTCCCGATATTACTTGAATAACTTTCAGGATGGGATTCGACAGTACCTACCTGTGGCATCAGCTTTGATAATTGGAGGTTTGACAGCAACAACCTTCACTCTTCAGCAGGCAAGCCAAAATACGCAACATTATGTGTCTTCAGTACTTTGTGTTGTAATAAGTGTTGGTGTCATGGCAATTGTCAAAGCTAATGGAAGACATTTATCCTCAAGACCTCGTTTGTGTGGTCTCTTGTGA

Predicted protein sequences of Glyma18g43270

Limit To All Plant Sequences

>Glyma18g43270.2   sequence type=predicted peptide   gene model=Glyma18g43270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWRRVANLEGGTANFIETEQFLENEEFKFSFLQPKIVEHHFHDLMQRYGEIVAIDLDKHGEEGQLSAAYAAEMQNQQHVRYVPFDFHHHYGSSNFDNMKILYDQISEDFEKQRYFLIDRQGNILEEQRGLVRLNYIDSLDRTNVTQRYLAQKSLNIQLQRIELYLFYLVWAEQGDEISLEYARTHALKGDLVRYGKQTITRMIKDGVSALSRYYLNNFQDGIRQYLPVASALIIGGLTATTFTLQQASQNTQHYVSSVLCVVISVGVMAIVKANGRHLSSRPRLCGLL*

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