Glyma18g43190 - SoyBase

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Report for Sequence Feature Glyma18g43190

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52605760
stop:	52608369
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01380	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr5:155784-157451 REVERSE LENGTH=323	SoyBase	E_val: 8.00E-72	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG4282	KOG	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain	JGI		ISS
PTHR10032	Panther	ZINC FINGER PROTEIN-RELATED	JGI		ISS
PTHR10032:SF121	Panther	TRANSCRIPTION FACTOR	JGI		ISS
UniRef100_G7JN34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger and SCAN domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JN34_MEDTR	SoyBase	E_val: 3.00E-111	ISS
UniRef100_I1N2Y5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2Y5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43190

Paralog	Evidence	Comments
Glyma07g18320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g202400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g43190

Limit To All Plant Sequences

>Glyma18g43190.3   sequence type=transcript   gene model=Glyma18g43190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCTCTCTTTTTCTCTCTCATCTTTTGCTTCTGTCTCTCTCCACCATAACCAAAACATCAAAAACACCCTTCAATAACTTCTTTCTCTTCTCTATTGGATTTCAATCTCTCCCTCTCACTCTGATTTTTTTTTTCTTTTTCAATTTTCATGGAGGGTCATCATCTCCATCACCGGCAACAACAATTACAACAACATCACCACCCTCATCACAACATCACAACTAGTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAAGAGACCAAAGAGTTCCTCGTGATCCGTGCCGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAACAGCTTTGGGAAGTCATCTCCAACCGGATGAAGGAAAAGGGTTTCCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTACAAGGGATGTGAAACGATGGAGCCGGAAGCGATGAGGCAGCAATTCCCGTTCTACAACGAGCTTCAAGCGATTTTCGCGGCGAGAATGCAGAGAATGTTGTGGGCGGAAGCAGAAGGAGGGTCCAATAATAAGAAGAAGGGGATGCACCTTTCTTCCGACGACGAGGAAGAAGGCAATGAAGAGATGATGAGCGAGGGGGATCACAAGGGTAACATCATCATCAGCAAGAAGAACAAGAAGAAGGGAAAGATGGTAATTGGCGTCGGAGGGAGTGGTAACAACAACAATAATAGTAGTAGTAGTAGTAACAACTTGGAGAGTTTGAAGGAGATCATGGACGAGTTCATGAGGCAGCAGATGCAAATGGAGGCACAGTGGATGGAAGCCTTTGAGGCAAGGGAGAATGAGAGGAGGCTGAAGGAGATGGAGTGGAGGCAAACCATGGAGGCGTTGGAGAATGAGAGGTTAATGATGGACCAAAGGTGGAGGGAGAGGGAAGAACAAAGAAGGATTAGGGAAGAAGTTAGGGCTGATAAGAGAGATGCTCTAATCACTGCTCTTCTTAACAAGCTCAGAAGAGAAGAGATGTAGTAGTTTCTTTTGGCTGGATAGATAGCTAGCTTTTATGTGTCTTTCTTCTTCTCATGAAGCAAAGCTTAATTTAAGAGCTAGGTGATTTCAATTTTGCATGCAAGAGTTCATATTCCGAATGGTTACTGACATTGACCCTGTGCATGTGAGAGAGCTAGCTAGGACATCATCATGATCATATTAGTACCAGAATTTCAGCCTCAGGTATGAACTTATGACTTTAAAGTGGCAATTAACACATTCATTAAGCCGTGTCATCTGTGA

Coding sequences of Glyma18g43190

Limit To All Plant Sequences

>Glyma18g43190.2   sequence type=CDS   gene model=Glyma18g43190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTCATCATCTCCATCACCGGCAACAACAATTACAACAACATCACCACCCTCATCACAACATCACAACTAGTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAAGAGACCAAAGAGTTCCTCGTGATCCGTGCCGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAACAGCTTTGGGAAGTCATCTCCAACCGGATGAAGGAAAAGGGTTTCCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTACAAGGGATGTGAAACGATGGAGCCGGAAGCGATGAGGCAGCAATTCCCGTTCTACAACGAGCTTCAAGCGATTTTCGCGGCGAGAATGCAGAGAATGTTGTGGGCGGAAGCAGAAGGAGGGTCCAATAATAAGAAGAAGGGGATGCACCTTTCTTCCGACGACGAGGAAGAAGGCAATGAAGAGATGATGAGCGAGGGGGATCACAAGGGTAACATCATCATCAGCAAGAAGAACAAGAAGAAGGGAAAGATGGTAATTGGCGTCGGAGGGAGTGGTAACAACAACAATAATAGTAGTAGTAGTAGTAACAACTTGGAGAGTTTGAAGGAGATCATGGACGAGTTCATGAGGCAGCAGATGCAAATGGAGGCACAGTGGATGGAAGCCTTTGAGGCAAGGGAGAATGAGAGGAGGCTGAAGGAGATGGAGTGGAGGCAAACCATGGAGGCGTTGGAGAATGAGAGGTTAATGATGGACCAAAGGTGGAGGGAGAGGGAAGAACAAAGAAGGATTAGGGAAGAAGTTAGGGCTGATAAGAGAGATGCTCTAATCACTGCTCTTCTTAACAAGCTCAGAAGAGAAGAGATGTAG

>Glyma18g43190.3   sequence type=CDS   gene model=Glyma18g43190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTCATCATCTCCATCACCGGCAACAACAATTACAACAACATCACCACCCTCATCACAACATCACAACTAGTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAAGAGACCAAAGAGTTCCTCGTGATCCGTGCCGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAACAGCTTTGGGAAGTCATCTCCAACCGGATGAAGGAAAAGGGTTTCCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTACAAGGGATGTGAAACGATGGAGCCGGAAGCGATGAGGCAGCAATTCCCGTTCTACAACGAGCTTCAAGCGATTTTCGCGGCGAGAATGCAGAGAATGTTGTGGGCGGAAGCAGAAGGAGGGTCCAATAATAAGAAGAAGGGGATGCACCTTTCTTCCGACGACGAGGAAGAAGGCAATGAAGAGATGATGAGCGAGGGGGATCACAAGGGTAACATCATCATCAGCAAGAAGAACAAGAAGAAGGGAAAGATGGTAATTGGCGTCGGAGGGAGTGGTAACAACAACAATAATAGTAGTAGTAGTAGTAACAACTTGGAGAGTTTGAAGGAGATCATGGACGAGTTCATGAGGCAGCAGATGCAAATGGAGGCACAGTGGATGGAAGCCTTTGAGGCAAGGGAGAATGAGAGGAGGCTGAAGGAGATGGAGTGGAGGCAAACCATGGAGGCGTTGGAGAATGAGAGGTTAATGATGGACCAAAGGTGGAGGGAGAGGGAAGAACAAAGAAGGATTAGGGAAGAAGTTAGGGCTGATAAGAGAGATGCTCTAATCACTGCTCTTCTTAACAAGCTCAGAAGAGAAGAGATGTAG

Predicted protein sequences of Glyma18g43190

Limit To All Plant Sequences

>Glyma18g43190.2   sequence type=predicted peptide   gene model=Glyma18g43190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGHHLHHRQQQLQQHHHPHHNITTSNVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCETMEPEAMRQQFPFYNELQAIFAARMQRMLWAEAEGGSNNKKKGMHLSSDDEEEGNEEMMSEGDHKGNIIISKKNKKKGKMVIGVGGSGNNNNNSSSSSNNLESLKEIMDEFMRQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERLMMDQRWREREEQRRIREEVRADKRDALITALLNKLRREEM*

>Glyma18g43190.3   sequence type=predicted peptide   gene model=Glyma18g43190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGHHLHHRQQQLQQHHHPHHNITTSNVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCETMEPEAMRQQFPFYNELQAIFAARMQRMLWAEAEGGSNNKKKGMHLSSDDEEEGNEEMMSEGDHKGNIIISKKNKKKGKMVIGVGGSGNNNNNSSSSSNNLESLKEIMDEFMRQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERLMMDQRWREREEQRRIREEVRADKRDALITALLNKLRREEM*

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