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Report for Sequence Feature Glyma18g43160

Feature Type:gene_model
Chromosome:Gm18
Start:52541810
stop:52550232
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51850AT Annotation by Michelle Graham. TAIR10: calcium-dependent protein kinase 13 | chr3:19232667-19235526 FORWARD LENGTH=528 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004683GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0032 KOG Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily JGI ISS
PTHR24349Panther SERINE/THREONINE-PROTEIN KINASE JGI ISS
PTHR24349:SF13Panther JGI ISS
PF00036PFAM EF hand JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9IGA3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium dependent protein kinase 13 n=1 Tax=Populus trichocarpa RepID=B9IGA3_POPTR SoyBaseE_val: 0ISS
UniRef100_I1N2Y3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2Y3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g43160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43160
ParalogEvidenceComments
Glyma07g18310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g202100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g43160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g43160
>Glyma18g43160.1   sequence type=CDS   gene model=Glyma18g43160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAACTGCTGTAGATCCCCGGCCGCCGTGGCCCGCGAGGACGTGAAATCGAGCTTCTCCAACGCCGACCACGGAAAGCGCGGCGGCGGAGAGAACATCGAGGACCCGATACCTGGTGGACTGCGAGCTCGTGAGCGGCGAGTTCGCGTGACGTACATCTGCATCGACCGCGACACGCGCGAGCTGCTCGCGTGCATGAGCATCTACAAGAGGAAGCTCCGGACCGCCGTCGACGTCGAGGACGAGCGCCGCGAGGTTGCCATCATGCGCCACCTGCCGGACAGCCCGAGCATCGTGTCGCTCCGCGAGGCATGCGAGGACGACAATGCCGTCCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATCGTCGCCCGCGGGCACTACACCGAGCGCGCCGCCGCGGCAGTCACGCGGACGATCGTCGAGGTCGTGCAGCTCTGCCACAAGCACGGGGTCATCCACCGAGACCTCAAGCCGGAGAACTTCTTGTTCGCGAACAAGAAGGAGAATTCGCCGCTCAAGGCTATTGACTTTGGCCTCTCCATATTCTTCAAGCCAGGTGAGAGGTTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAAGTGCTCAAGCGGAATTATGGACCAGAAATAGATATATGGAGTGCAGGAGTAATTCTCTACATCTTATTGTGTGGTGTTCCCCCATTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGACTTATAGATTTTAAAAGGGAACCATGGCCCAGTATTTCTGAAAGTGCTAAAAGCCTTGTTAGGCAAATGTTAGAACCAGACCCCAAGCTTCGATTAACTGCCAAACAAGTGCTTGAGCATCCCTGGATTCAAAATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATGTTCAAGAAGATGGATAATGATAATGATGGCATTGTTTCCATTGAAGAACTAAAAGCTGGATTTCGAAACTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTGTAGATACTAATGGTAAGGGAACACTAGACTATGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGATCATCTTCACAAGGCCTTCTCCTATTTTGACAAAGATGGGAATGGATATATTGAACCAGATGAGCTACGGAATGCTTTGATGGAAGATGGAGCAGAGGACTGTACAGATGTAGCAAATGATATTTTCCTAGAAGTAGACACGGACAAGGATGGACGTATCAGCTATGATGAATTTGTTGCTATGATGAAAACTGGAACGGATTGGAGAAAAGCATCAAGGCATTACTCGCGTGGAAGATTCAACAGCTTGAGCTTAAAGTTGATGAAAGACGGTTCTTTAAACTTAGGAAATGAGTAG
Predicted protein sequences of Glyma18g43160
>Glyma18g43160.1   sequence type=predicted peptide   gene model=Glyma18g43160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCCRSPAAVAREDVKSSFSNADHGKRGGGENIEDPIPGGLRARERRVRVTYICIDRDTRELLACMSIYKRKLRTAVDVEDERREVAIMRHLPDSPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWIQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDNDNDGIVSIEELKAGFRNFGSQLAESEVQLLIEAVDTNGKGTLDYGEFVAVSLHLKRMANDDHLHKAFSYFDKDGNGYIEPDELRNALMEDGAEDCTDVANDIFLEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE*






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