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Report for Sequence Feature Glyma18g43136

Feature Type:gene_model
Chromosome:Gm18
Start:52472822
stop:52473822
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43136
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05600AT Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371 SoyBaseE_val: 3.00E-74ISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016706GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors SoyBaseN/AISS
PTHR10209Panther FE(II)/ ASCORBATE OXIDASE SUPERFAMILY JGI ISS
PTHR10209:SF55Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI JGI ISS
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI ISS
UniRef100_G8A2N5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucoanthocyanidin dioxygenase n=2 Tax=Medicago truncatula RepID=G8A2N5_MEDTR SoyBaseE_val: 1.00E-90ISS
UniRef100_I1N2Y2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2Y2_SOYBN SoyBaseE_val: 2.00E-112ISS

Expression Patterns of Glyma18g43136
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g43136 not represented in the dataset
Glyma18g43136 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g43136 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g43136
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g43136
>Glyma18g43136.1   sequence type=CDS   gene model=Glyma18g43136   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTTGGGGGAGGAGAGTGAGGTTGGTGCATGCCTAAGGGTGAATTTCTACCCAAAGTGCCCTCAACCTGACCTCACTTTTGGACTCTCCCCTCACTCAGACCCTGGTGGCATGACCATTCTTCTCTCTGATGACTTTGTGTCTGGCCTTCAAGTAAGAAGAGGAGATGAATGGGTCATAGTTAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGGTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACTCAAACAAAGATCGTGTGTCCTTGGCATTGTTCTATAACCCGAGAAGTGATTTACTCATTCAACCTGCCAAGGAGCTTGTGACAGAGGAGAGGCCAGCCTTGTACTCACCAATGACCTATGATGAATACAGACTTTACATTAGGCTAAATGGACCTTGTGGAAAGGCCCAAGTTGAATCACTGGCTTTCCAACCATGA
Predicted protein sequences of Glyma18g43136
>Glyma18g43136.1   sequence type=predicted peptide   gene model=Glyma18g43136   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLGEESEVGACLRVNFYPKCPQPDLTFGLSPHSDPGGMTILLSDDFVSGLQVRRGDEWVIVKPVPNAFVINIGDQIQVLSNAIYKSVEHRVIVNSNKDRVSLALFYNPRSDLLIQPAKELVTEERPALYSPMTYDEYRLYIRLNGPCGKAQVESLAFQP*






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