Glyma18g43130 - SoyBase

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Report for Sequence Feature Glyma18g43130

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52462818
stop:	52467751
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01060	AT	Annotation by Michelle Graham. TAIR10: myb-like HTH transcriptional regulator family protein \| chr2:73456-74902 REVERSE LENGTH=286	SoyBase	E_val: 2.00E-43	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_B6UDE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor n=1 Tax=Zea mays RepID=B6UDE6_MAIZE	SoyBase	E_val: 3.00E-42	ISS
UniRef100_I1N2Y1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2Y1_SOYBN	SoyBase	E_val: 1.00E-167	ISS

Expression Patterns of Glyma18g43130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g43130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g201800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g43130

Limit To All Plant Sequences

>Glyma18g43130.2   sequence type=transcript   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAATTGACTGAATCATAGGCATTCTCGCCACCAAATGAATCTTCCCCTTAGGGACAAAGAACAAACCACAAGACATGGACAACAAAAGTTAATTTTGAGACATGGATATTTTCGACAATTAGAGACAGTTAGCAGAATCTAAGGAAAGCCAATGTAACTTAGTGAACATCGCAACCTAGGTTAATTCTCTGTTTTTTTTTTGTCCTTGTTAGACACGCTTTATGCTATAATCCTCTTCTTTACAACCCCATATGATTTGGGCTCTCAGACCCCAAAAGTTCAGTTATGGGTTCCAAACAACGCCTACGTGGCTCTGCCACTGCCAAAGAACGCCTACGCTGGACACAAGAACTCCATGATCGTTTTGTGGAGGCTGTAAATAGACTTGGGGGCCCTGAGAGGGCAACACCAAAAGGTATATTGAAAGAAATGAAGGCTATGGGTGTTTCAGAATTAAACATATATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGAGTTTTGTTTAATTAGAATATATGTTTGCCTAATAAAAGAATGATGATGATGTCGATCTTATTGTAATGTTTGGTTGATGTTTTGGGCCTTCAAAGCATTTAAGTGGGGACATTCATTCATATCTCGGAGGACCTAGAAAGGAACCAAATAATATCTGTACTTTGTAATATACTGTTGGACAAAATAAAAGTTTGAGCTTGGTTAGAATTGCCATATTATTCATATATACATTTTGAGAATGGTTGA

>Glyma18g43130.3   sequence type=transcript   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTCAAAATTAAGAAATCTAAACTCCTCGAACAAGCGATCTATCACACTCTTTTGCTCGTTTTTGGTCTCTCGATTCTAGCTCAAAATCTGTAGTTTGAACTCCCATCTGTAGAAGGCTTAATCAGAGCGAAGGTGAAGGGGCAACACCAAAAGGTATATTGAAAGAAATGAAGGCTATGGGTGTTTCAGAATTAAACATATATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGAGTTTTGTTTAATTAGAATATATGTTTGCCTAATAAAAGAATGATGATGATGTCGATCTTATTGTAATGTTTGGTTGATGTTTTGGGCCTTCAAAGCATTTAAGTGGGGACATTCATTCATATCTCGGAGGACCTAGAAAGGAACCAAATAATATCTGTACTTTGTAATATACTGTTGGACAAAATAAAAGTTTGAGCTTGGTTAGAATTGCCATATTATTCATATATACATTTTGAGAATGGTTGA

>Glyma18g43130.4   sequence type=transcript   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGCACAAATATGAAACTTGTTTTATGAAATGAAAATTAGGACAAAGGGTGGTGTGCCATGTCAAGCAGAAAAAGGCTTCTAGATAAAGTGAAATTTTTACTTTTCATGGGGCAACACCAAAAGGTATATTGAAAGAAATGAAGGCTATGGGTGTTTCAGAATTAAACATATATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGAGTTTTGTTTAATTAGAATATATGTTTGCCTAATAAAAGAATGATGATGATGTCGATCTTATTGTAATGTTTGGTTGATGTTTTGGGCCTTCAAAGCATTTAAGTGGGGACATTCATTCATATCTCGGAGGACCTAGAAAGGAACCAAATAATATCTGTACTTTGTAATATACTGTTGGACAAAATAAAAGTTTGAGCTTGGTTAGAATTGCCATATTATTCATATATACATTTTGAGAATGGTTGA

>Glyma18g43130.5   sequence type=transcript   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGGAAATCAAAATAAAGTTAGGTTCAGAAATCTAATAAGTTCTGCACGGGTGTTTTCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGAGTTTTGTTTAATTAGAATATATGTTTGCCTAATAAAAGAATGATGATGATGTCGATCTTATTGTAATGTTTGGTTGATGTTTTGGGCCTTCAAAGCATTTAAGTGGGGACATTCATTCATATCTCGGAGGACCTAGAAAGGAACCAAATAATATCTGTACTTTGTAATATACTGTTGGACAAAATAAAAGTTTGAGCTTGGTTAGAATTGCCATATTATTCATATATACATTTTGAGAATGGTTGA

Coding sequences of Glyma18g43130

Limit To All Plant Sequences

>Glyma18g43130.1   sequence type=CDS   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCAAACAACGCCTACGTGGCTCTGCCACTGCCAAAGAACGCCTACGCTGGACACAAGAACTCCATGATCGTTTTGTGGAGGCTGTAAATAGACTTGGGGGCCCTGAGAGGGCAACACCAAAAGGTATATTGAAAGAAATGAAGGCTATGGGTGTTTCAGAATTAAACATATATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGA

>Glyma18g43130.2   sequence type=CDS   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCAAACAACGCCTACGTGGCTCTGCCACTGCCAAAGAACGCCTACGCTGGACACAAGAACTCCATGATCGTTTTGTGGAGGCTGTAAATAGACTTGGGGGCCCTGAGAGGGCAACACCAAAAGGTATATTGAAAGAAATGAAGGCTATGGGTGTTTCAGAATTAAACATATATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGA

>Glyma18g43130.3   sequence type=CDS   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGCTATGGGTGTTTCAGAATTAAACATATATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGA

>Glyma18g43130.4   sequence type=CDS   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGCTATGGGTGTTTCAGAATTAAACATATATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGA

>Glyma18g43130.5   sequence type=CDS   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGATATACTGCCAAATTTTAGTTCTATAACTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAGACAGGGATGCAAAATCGCCTGCGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAGGGAAAGTACTTTGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGGAAAGGCATGCAAGCCTTTTGCTTCGACAATTGCATCTCTGCCTTCACTTTTTGAGGAATCTGAATCCTTGAAAACTCAACCTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAAGATTTCAGGAGAGGGTGTTTTTCCAACAAGTTTTGATCATGAATCATCCACCCCACCTGAATGCTACAACGAAACCTGGGATTTTTCTTGGAGTCAACTTGCAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATGA

Predicted protein sequences of Glyma18g43130

Limit To All Plant Sequences

>Glyma18g43130.1   sequence type=predicted peptide   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKQRLRGSATAKERLRWTQELHDRFVEAVNRLGGPERATPKGILKEMKAMGVSELNIYHVKSHLQKYRISKLIPESPTRGKLEKRSMSDILPNFSSITALQLKEVLQMQTGMQNRLRDKTERSLKLKIEAQGKYFERIGQSNHSKTIIGKACKPFASTIASLPSLFEESESLKTQPEEEHQSAKKQKISGEGVFPTSFDHESSTPPECYNETWDFSWSQLAAACQSPLVPSFL*

>Glyma18g43130.2   sequence type=predicted peptide   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKQRLRGSATAKERLRWTQELHDRFVEAVNRLGGPERATPKGILKEMKAMGVSELNIYHVKSHLQKYRISKLIPESPTRGKLEKRSMSDILPNFSSITALQLKEVLQMQTGMQNRLRDKTEVQRSLKLKIEAQGKYFERIGQSNHSKTIIGKACKPFASTIASLPSLFEESESLKTQPEEEHQSAKKQKISGEGVFPTSFDHESSTPPECYNETWDFSWSQLAAACQSPLVPSFL*

>Glyma18g43130.3   sequence type=predicted peptide   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKAMGVSELNIYHVKSHLQKYRISKLIPESPTRGKLEKRSMSDILPNFSSITALQLKEVLQMQTGMQNRLRDKTEVQRSLKLKIEAQGKYFERIGQSNHSKTIIGKACKPFASTIASLPSLFEESESLKTQPEEEHQSAKKQKISGEGVFPTSFDHESSTPPECYNETWDFSWSQLAAACQSPLVPSFL*

>Glyma18g43130.4   sequence type=predicted peptide   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKAMGVSELNIYHVKSHLQKYRISKLIPESPTRGKLEKRSMSDILPNFSSITALQLKEVLQMQTGMQNRLRDKTEVQRSLKLKIEAQGKYFERIGQSNHSKTIIGKACKPFASTIASLPSLFEESESLKTQPEEEHQSAKKQKISGEGVFPTSFDHESSTPPECYNETWDFSWSQLAAACQSPLVPSFL*

>Glyma18g43130.5   sequence type=predicted peptide   gene model=Glyma18g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDILPNFSSITALQLKEVLQMQTGMQNRLRDKTEVQRSLKLKIEAQGKYFERIGQSNHSKTIIGKACKPFASTIASLPSLFEESESLKTQPEEEHQSAKKQKISGEGVFPTSFDHESSTPPECYNETWDFSWSQLAAACQSPLVPSFL*

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