Report for Sequence Feature Glyma18g43120
Feature Type: gene_model
Chromosome: Gm18
Start: 52456003
stop: 52460807
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g43120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G05610 AT
Annotation by Michelle Graham. TAIR10: alfin-like 1 | chr5:1677331-1678942 REVERSE LENGTH=241
SoyBase E_val: 3.00E-117 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0035064 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methylated histone residue binding
SoyBase N/A ISS
KOG1632
KOG
Uncharacterized PHD Zn-finger protein
JGI ISS
PTHR23123 Panther
PHD/F-BOX CONTAINING PROTEIN
JGI ISS
PF00628 PFAM
PHD-finger
JGI ISS
PF12165 PFAM
Domain of unknown function (DUF3594)
JGI ISS
UniRef100_A0FK64 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: PHD4 (Fragment) n=1 Tax=Medicago truncatula RepID=A0FK64_MEDTR
SoyBase E_val: 1.00E-138 ISS
UniRef100_I1N2Y0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2Y0_SOYBN
SoyBase E_val: 1.00E-176 ISS
Expression Patterns of Glyma18g43120
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g43120
Paralog Evidence Comments
Glyma07g18270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g43120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g201700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g43120
Coding sequences of Glyma18g43120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g43120.1 sequence type=CDS gene model=Glyma18g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACATGGCTTCCAGTCCCCGCACCGTTGAAGAGATCTTCAAGGATTACGGCGCCAGAAGAACTGCCGTTATTCGCGCTCTCACTCACGACGTTGATGAATTTTACGGCCTCTGTGATCCAGATAAGGATAACCTGTGCCTCTATGGACATCCAAATGAGGCCTGGGAAGTAACTCTGCCAGCGGAGGAAGTTCCGCCAGAGCTCCCTGAGCCTGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCGTGGTTGGTTTCTGTGGCCTTTTACCTCGGGGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCATCTGTTTTTGAAGTTGTGACTGACAGGAAACCAGTTAAGGACAAGCCAACTGCAGATAGTGGAAGCAAGTCTAGGGGAAGTGCCAAGAGATCTAGTGATGAGCAAGTTAAAAGCAACCCAAAGTTTGTAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAATGAAACACTTTGTGGAAGCTGCGGCGGAAATTACAATGCTGATGAGTTTTGGATTTGCTGTGACATATGTGAGAGGTGGTTCCACGGGAAGTGTGTTAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATATAAATGTCCATCATGCAGCCTGAGGCGGGGCAGGCCATAG
Predicted protein sequences of Glyma18g43120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g43120.1 sequence type=predicted peptide gene model=Glyma18g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDMASSPRTVEEIFKDYGARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTDRKPVKDKPTADSGSKSRGSAKRSSDEQVKSNPKFVDEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
