Glyma18g43110 - SoyBase

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Report for Sequence Feature Glyma18g43110

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52444301
stop:	52448879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01390	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock family protein \| chr5:160500-162199 REVERSE LENGTH=335	SoyBase	E_val: 3.00E-178	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0714	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24077	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24077:SF88	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF01556	PFAM	DnaJ C terminal region	JGI		ISS
UniRef100_B9SQ17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein SIS1, putative n=1 Tax=Ricinus communis RepID=B9SQ17_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F28D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F28D related cluster n=1 Tax=unknown RepID=UPI000233F28D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43110

Paralog	Evidence	Comments
Glyma07g18260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g201600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43110

Limit To All Plant Sequences

>Glyma18g43110.1   sequence type=CDS   gene model=Glyma18g43110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGTGGACTACTACAAGATTCTTCAGGTAGATAGAAGTGCCAAAGATGAGGATCTCAAGAAAGCATATCGAAGGCTAGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGATGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGAGGGGTTGAATGGGGTGCCGCCAGGCGCAGGTGGTTTTCCTGGTGGTGGCGACGGTGGGCCGACGTCATTCCGGTTCAATCCCAGAAGTGCAGATGATATATTTTCCGAGTTTTTCGGGTTTTCGAGACCCTTTGGTGGAATGGGGGACATGGGTGGCCGAGCTGGTGGCTCTGGATTTTCCAGGGGTGGCCCGTTTGGTGAAGATATCTTTGCTCAATTTAGGAGTGCAGCTGGGGAGAGCTGTGGCCATATGCAAAGGAAAGGTGCAGCCATTGAGAGACAATTGCCTTGTAGCTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGCCAGTGGGAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAGCAGAGAGGAGTTATCCCTTCAGACCTTGTCTTTATTATTGATGAGAAACCTCATAGTCTCTTTAAAAGGGATGGCAATGATCTTGTTGTCACCCAGAAGATATCGCTTGTAGAAGCCTTGACAGGTTACACAGTGCAGCTGACAACCCTTGATGGGCGGAATCTTACATTCCCCATTAACTCCACTATTAGTCCAACATATGAAGAAGTTGTCAAAGGAGAGGGTATGCCCATTCCAAAAGAACCTTCCAAGAAGGGAAACTTAAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTTACATCCGAACAGAAAAGTGGCATCAAGCGATTATTGACATCTCCTTAA

Predicted protein sequences of Glyma18g43110

Limit To All Plant Sequences

>Glyma18g43110.1   sequence type=predicted peptide   gene model=Glyma18g43110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVDYYKILQVDRSAKDEDLKKAYRRLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRGIYDQYGEEGLNGVPPGAGGFPGGGDGGPTSFRFNPRSADDIFSEFFGFSRPFGGMGDMGGRAGGSGFSRGGPFGEDIFAQFRSAAGESCGHMQRKGAAIERQLPCSLEDLYKGTTKKMKISRDVSDASGRPSTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRNLTFPINSTISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP*

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