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Report for Sequence Feature Glyma18g43080

Feature Type:gene_model
Chromosome:Gm18
Start:52411909
stop:52415341
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g43080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11210AT Annotation by Michelle Graham. TAIR10: SGNH hydrolase-type esterase superfamily protein | chr3:3511101-3512899 REVERSE LENGTH=256 SoyBaseE_val: 1.00E-114ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
KOG3035 KOG Isoamyl acetate-hydrolyzing esterase JGI ISS
PTHR14209Panther ISOAMYL ESTERASE - RELATED JGI ISS
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI ISS
UniRef100_Q9AYM5UniRef Annotation by Michelle Graham. Most informative UniRef hit: CPRD49 protein n=1 Tax=Vigna unguiculata RepID=Q9AYM5_VIGUN SoyBaseE_val: 1.00E-166ISS
UniRef100_UPI000233F28CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F28C related cluster n=1 Tax=unknown RepID=UPI000233F28C SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g43080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g43080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g201400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g43080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g43080
>Glyma18g43080.1   sequence type=CDS   gene model=Glyma18g43080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGGCCCGATGAGACCTAAGATTGTGCTCTTTGGCTCCTCTATAGTTCAGATGAGTTTCGATAATGGTGGTTGGGGTGCTATTCTGGCAAATTTGTATTCTAGAAAGGCGGACATAATATTGCGAGGATACTCAGGTTGGAATTCAAGGCAAGCTTTGGATGTTTTGGATGAAGTTTTCTCTAAGGATGCTCATGTGCAACCATCATTGGTAATTGTGTACTTTGGGGGTAATGATTCCGTTCACCCTCACCCATCTGGCCTTGGTCCTCATGTGCCCCTCCAAGAATACGTTGCAAACATGAGGAAGATTGCTAACCATCTTAAGAGCCTCTCCGATCATATTCGCATTATATTTCTCACCTCTCCTCCCATCAATGAAGAACAAATCCGCAAAAAGCTCAGTGCAACCCAATCAGGAAGAACCAATGAATCCTGTGGAGAGTATGCAGATGCCTTAATGGAGCTTTGTGACGAGATGAATATCAAGGCCATTAATCTGTGGTCTGCAATTCAGACAAGGGATGACTGGTTAGATGTTAGTTTCACGGATGGAGTTCATCTATCAGCAGAGGGAAGCAAGGTAGTGGTGAAGGAAATATTAAAGGTTCTAAGAGAAGTAGATTGGAAGCCTAGTCTGCATTGGATGTCAATGCCAACTGAATATGCAGAAGATTCACCATATTATCCTCCCAATCCCGATGGAACAACAACCATAAATGTGTCCTACTGTATCTCACGGAAGTGGTTGCAATGGGATGATCTGTAG
Predicted protein sequences of Glyma18g43080
>Glyma18g43080.1   sequence type=predicted peptide   gene model=Glyma18g43080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGPMRPKIVLFGSSIVQMSFDNGGWGAILANLYSRKADIILRGYSGWNSRQALDVLDEVFSKDAHVQPSLVIVYFGGNDSVHPHPSGLGPHVPLQEYVANMRKIANHLKSLSDHIRIIFLTSPPINEEQIRKKLSATQSGRTNESCGEYADALMELCDEMNIKAINLWSAIQTRDDWLDVSFTDGVHLSAEGSKVVVKEILKVLREVDWKPSLHWMSMPTEYAEDSPYYPPNPDGTTTINVSYCISRKWLQWDDL*






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