Glyma18g43040 - SoyBase

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Report for Sequence Feature Glyma18g43040

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52366024
stop:	52369763
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g43040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11210	AT	Annotation by Michelle Graham. TAIR10: SGNH hydrolase-type esterase superfamily protein \| chr3:3511101-3512899 REVERSE LENGTH=256	SoyBase	E_val: 5.00E-112	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
KOG3035	KOG	Isoamyl acetate-hydrolyzing esterase	JGI		ISS
PTHR14209	Panther	ISOAMYL ESTERASE - RELATED	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_G7JP31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase CPRD49 n=1 Tax=Medicago truncatula RepID=G7JP31_MEDTR	SoyBase	E_val: 7.00E-126	ISS
UniRef100_I1N2X5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2X5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g43040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g43040

Paralog	Evidence	Comments
Glyma07g18170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g43040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g201100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g43040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g43040

Limit To All Plant Sequences

>Glyma18g43040.1   sequence type=CDS   gene model=Glyma18g43040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGACCATTATTAAGGCCTCAGTTTGTTATGTTCGGTTCTTCCATTGTTCAGTATGGTCTTTATGATGAAGGTTGGATGGCTGATCTTTCTCACTTGTATGCTCGCAAGGTTGATATAGTTTTGCGAGGATATGCTGGTTGGAATTCAAGGCGTGCTCTGCAGGTTCTGGATAAAATCTTTCCTAAGGATGCCCCTGTACAACCTTCATTGGTCATTGCCTACTTTGGTGGTAATGATTCTTCTACTCCCCACTCATCAGGCCTAGGTCCTCATGTGCCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAGTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGGCATGTTTGGATGTGTGCCGTGAGATGAATATCAAGGCCATTGATCTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCATTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATACTGAAGGTCCTCAAAGATGCAGAATGGGAACCAAGTCTATATTGGAAATCAATGCCAAGTGAGTTTGATGAAGATTCACCATATGATCCAATTGCACCTGATGGAAAGTCAACTATTAATATTTCCAACTGGGCCTTCCCTGGCAATGACAAATGGGAGTAG

Predicted protein sequences of Glyma18g43040

Limit To All Plant Sequences

>Glyma18g43040.1   sequence type=predicted peptide   gene model=Glyma18g43040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGPLLRPQFVMFGSSIVQYGLYDEGWMADLSHLYARKVDIVLRGYAGWNSRRALQVLDKIFPKDAPVQPSLVIAYFGGNDSSTPHSSGLGPHVPLQEYIENLRKIVNHLKSLSENTRILLLSAPPINDATITPNSDGKPSRTNEACRIYSEACLDVCREMNIKAIDLWSAIKKRDNWQDVCFIDGIHLSSEGSKIVLKEILKVLKDAEWEPSLYWKSMPSEFDEDSPYDPIAPDGKSTINISNWAFPGNDKWE*

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