Glyma18g42940 - SoyBase

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Report for Sequence Feature Glyma18g42940

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52256930
stop:	52263388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32780	AT	Annotation by Michelle Graham. TAIR10: GroES-like zinc-binding dehydrogenase family protein \| chr1:11869977-11872595 REVERSE LENGTH=394	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0022	KOG	Alcohol dehydrogenase, class III	JGI		ISS
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI		ISS
PTHR11695:SF309	Panther	ALCOHOL DEHYDROGENASE 1	JGI		ISS
PF00107	PFAM	Zinc-binding dehydrogenase	JGI		ISS
PF08240	PFAM	Alcohol dehydrogenase GroES-like domain	JGI		ISS
UniRef100_G7KS94	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase-like protein n=1 Tax=Medicago truncatula RepID=G7KS94_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N2X1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2X1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g42940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42940

Paralog	Evidence	Comments
Glyma07g18130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g200300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g42940

Limit To All Plant Sequences

>Glyma18g42940.2   sequence type=transcript   gene model=Glyma18g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAAACAGATGTGCAGTCTCAATAAATTGCTCTGTAGTGAGGGTCCTTTGGTTCAGTTTCATCAACCATAATTTTTCTATTTCGAGTTCCATCTTCTTTCAAGCCAGCCCCCACTTCCATAAAAACACAAAAAGGCCCCCAGAGCAAAAGTTTAGAGGAACATGGCATGTCCAGCAATGGCAAATGGGAACGACTCATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGTGAGCGAGGCTCAGCGTGCTTATCCTCGGATTTTGGGCCATGAAGCATCTGGGATTGTGGAGAGTGTGGGGGAAGGAGTGAGTGAAGTGAAGGAAGGGGACATAGTGGTGCCAATATTCAATGGGGAGTGTGGAGAGTGTACCTTGTGCAAGTGTGAGAAGACCAACAAGTGTGAGATATATGGGGTGAATCCCATGAAGAAGGTGATGGAAGGAGATGGCACAAGCAGATTCTCCACAGTTCATGGGAAACCCATTTTCCATTTCTTGAACACTTCGACTTTCTCGGAGTACACGGTGGTGGATTCGGCCTGTGTGGTGAAGTTTGTGAGCACAGACCACAGTCTCAGCATCAAGAACCTCACCTTGCTCAGTTGTGGTGTCTCCACAGGGGTTGGAGCTGCTTGGAATACAGCTAATGTGCATTCGGGTTCAACTGTAGCTGTTTTCGGCTTAGGAGCTGTTGGGCTCGCTGTTGCTGAAGGGGCACGAGCTAGAGGTGCATCCAAAATAATAGGTGTAGACATCAACCCTGACAAATTCATCAAAGCTATGGGAGTGACAAACTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAGAGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTGTATTTGGAGGTTTCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAGTAATGATCATCACTACTTGAATTTCTTTTATAAAATTATGCAATGAGTTTTCATGAGCAAATAATGTTATATTCTTTTATTATATTATTCAA

Coding sequences of Glyma18g42940

Limit To All Plant Sequences

>Glyma18g42940.1   sequence type=CDS   gene model=Glyma18g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATGTCCAGCAATGGCAAATGGGAACGACTCATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGTGAGCGAGGCTCAGCGTGCTTATCCTCGGATTTTGGGCCATGAAGCATCTGGGATTGTGGAGAGTGTGGGGGAAGGAGTGAGTGAAGTGAAGGAAGGGGACATAGTGGTGCCAATATTCAATGGGGAGTGTGGAGAGTGTACCTTGTGCAAGTGTGAGAAGACCAACAAGTGTGAGATATATGGGGTGAATCCCATGAAGAAGGTGATGGAAGGAGATGGCACAAGCAGATTCTCCACAGTTCATGGGAAACCCATTTTCCATTTCTTGAACACTTCGACTTTCTCGGAGTACACGGTGGTGGATTCGGCCTGTGTGGTGAAGTTTGTGAGCACAGACCACAGTCTCAGCATCAAGAACCTCACCTTGCTCAGTTGTGGTGTCTCCACAGGGGTTGGAGCTGCTTGGAATACAGCTAATGTGCATTCGGGTTCAACTGTAGCTGTTTTCGGCTTAGGAGCTGTTGGGCTCGCTGTTGCTGAAGGGGCACGAGCTAGAGGTGCATCCAAAATAATAGGTGTAGACATCAACCCTGACAAATTCATCAAAGCTATGGGAGTGACAAACTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAGAGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTGTATTTGGAGGTTTCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAGACAAAGCCTTTGATCTTTTGATCACTGGGAAGTCACTGAGATGTCTTCTGCACTTCTAA

>Glyma18g42940.2   sequence type=CDS   gene model=Glyma18g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATGTCCAGCAATGGCAAATGGGAACGACTCATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGTGAGCGAGGCTCAGCGTGCTTATCCTCGGATTTTGGGCCATGAAGCATCTGGGATTGTGGAGAGTGTGGGGGAAGGAGTGAGTGAAGTGAAGGAAGGGGACATAGTGGTGCCAATATTCAATGGGGAGTGTGGAGAGTGTACCTTGTGCAAGTGTGAGAAGACCAACAAGTGTGAGATATATGGGGTGAATCCCATGAAGAAGGTGATGGAAGGAGATGGCACAAGCAGATTCTCCACAGTTCATGGGAAACCCATTTTCCATTTCTTGAACACTTCGACTTTCTCGGAGTACACGGTGGTGGATTCGGCCTGTGTGGTGAAGTTTGTGAGCACAGACCACAGTCTCAGCATCAAGAACCTCACCTTGCTCAGTTGTGGTGTCTCCACAGGGGTTGGAGCTGCTTGGAATACAGCTAATGTGCATTCGGGTTCAACTGTAGCTGTTTTCGGCTTAGGAGCTGTTGGGCTCGCTGTTGCTGAAGGGGCACGAGCTAGAGGTGCATCCAAAATAATAGGTGTAGACATCAACCCTGACAAATTCATCAAAGCTATGGGAGTGACAAACTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAGAGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTGTATTTGGAGGTTTCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAGTAATGATCATCACTACTTGA

Predicted protein sequences of Glyma18g42940

Limit To All Plant Sequences

>Glyma18g42940.1   sequence type=predicted peptide   gene model=Glyma18g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACPAMANGNDSLNLKPSETKGKTITCKAAVAYGPGEPFVVENILVHPPQKMEVRIKILYTSICHTDLSAWRGVSEAQRAYPRILGHEASGIVESVGEGVSEVKEGDIVVPIFNGECGECTLCKCEKTNKCEIYGVNPMKKVMEGDGTSRFSTVHGKPIFHFLNTSTFSEYTVVDSACVVKFVSTDHSLSIKNLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFIKAMGVTNFINPKDEEKPVYERIREMTDGGVHYSFECTGNVDVLRDAFLSAHEGWGLTVVLGIHASPTLLPIHPMELFDGRNIVGSVFGGFKGRSHLPHFAKQCGQGVVKLDNFITHELPLEEIDKAFDLLITGKSLRCLLHF*

>Glyma18g42940.2   sequence type=predicted peptide   gene model=Glyma18g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACPAMANGNDSLNLKPSETKGKTITCKAAVAYGPGEPFVVENILVHPPQKMEVRIKILYTSICHTDLSAWRGVSEAQRAYPRILGHEASGIVESVGEGVSEVKEGDIVVPIFNGECGECTLCKCEKTNKCEIYGVNPMKKVMEGDGTSRFSTVHGKPIFHFLNTSTFSEYTVVDSACVVKFVSTDHSLSIKNLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFIKAMGVTNFINPKDEEKPVYERIREMTDGGVHYSFECTGNVDVLRDAFLSAHEGWGLTVVLGIHASPTLLPIHPMELFDGRNIVGSVFGGFKGRSHLPHFAKQCGQGVMIITT*

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