Glyma18g42930 - SoyBase

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Report for Sequence Feature Glyma18g42930

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52213066
stop:	52220249
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01510	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF647 \| chr5:201702-205151 FORWARD LENGTH=509	SoyBase	E_val: 6.00E-154	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4249	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12770	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR12770:SF2	Panther	gb def: expressed protein [arabidopsis thaliana]	JGI		ISS
PF04884	PFAM	Protein of unknown function, DUF647	JGI		ISS
UniRef100_Q54YB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DUF647 family protein n=1 Tax=Dictyostelium discoideum RepID=Q54YB8_DICDI	SoyBase	E_val: 2.00E-33	ISS
UniRef100_UPI000233E55E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E55E related cluster n=1 Tax=unknown RepID=UPI000233E55E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g42930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g42930 not represented in the dataset	Glyma18g42930 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42930

Paralog	Evidence	Comments
Glyma07g18120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g200200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g42930

Limit To All Plant Sequences

>Glyma18g42930.3   sequence type=transcript   gene model=Glyma18g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAGGCTTTCACCATAGAAGCCAGGAAGGAACCAATCTATTCAAATTTTGCAACCTTTTCACAATTCAAACATAGGAACCTTGGAATTTTGCTGTTTTTTTTTATCAATGTCTCATACCTTGCAATTTTCATTTCTTTTCAAGTGCATTCAATTCTCCAATGAAGGTAGAGAAGATGAACAGAGTTAGGCCTCGTGGCTTTCAAATTCTATGCTCTTCTGAGCATTCCAGTTTCAAAGATGAAGATGATGCTGAAAATGGAGGGTCTGATACTTCTTTGTTTGGTTGTTTTGTTTTGCTGAGAAAACTTCAAAGGAGGTCAAGTTTCATCGCGGGTGATACAGGTGGAGAGATATAGCAATGGCTTCAACTATCCCTCTTGTGAGCAGATGTGTATTAGGTGATGATTTGCAGTTGCAAACCTTTCTTGTTGAGGAGGATACGTCTACGCCAAAAAGGTTCCAGGATTCATATTCCCCTGATGAAAGCCTATCCTGGCTTCCAGACACAATCAAAGATTTTATCCTACCAGCAGGCTTTCCTGGATCAGTTTCAGATGATTACTTGGATTACATGTTATTACAGTTCCCTACCAATGTGACTGGATGGATCTGTCACACCCTAGTCACTTCAAGTCTCCTAAAGGCCGTTGGTATTGGCTCTTTCTCTGGAACCTCAGCAACTGCTTCTGCTTCTGCCATCAGGTGGGTCTCTAAGGATGGCATTGGAGCTGTTGGACGATTATGCCTTGGTGGGCGGTTTGGAAGTCTTTTTGATGACGATCCTAAGCAATGGAGAATGTATGCGGACTTCATTGGCAGTGCTGGAAGCATTTTTTATCTGACAACCCAAGTATATCCTGACTATTTCCTTCCTTTGGCATCTCTTGGAAATCTTACCAAGGCTGTAGCGAGAGGACTAAAAGATCCTTCTTTTTGTGTGATTCAAAACCACTTTGCAATTTCAGGAAATCTAGGAGAGGTAGCCGCAAAGGAAGAAATTTGGGAAGTGGTTGCTCAACTGATTGGCCTTGCTTTAGGCATATTGATTCTGGATACACCCAGCCTTGTAAAATCATATGGTGTACTTTCATTACCTTGGTTGGGTATGCAGTTTCTGCATCTTTGGCTACGCTACAAATCACTTTCAGTTCTCCAGTTTAACACAATAAATCTAAAGCGTGTGTTACACTCTACTGTTCCAGGATGCACATATTGCAACCGAGAAGAGAATATATTAACTAGGTCGCAATTCATGAAGCCAAAAATAAATTTTGGCTTGCCCTTGGAGAAAATAGATGGCGTGGAGAGATCTCATTTTATGGTGGAAGCACTTCTAAAATTATATGCAAGTGAGAAATATATTCTCATGGTGAATCAGCAGCTGGAAGATTTGAGATTTTATGCTTCTTTCAAGTTCACCTGACAACTTAAGCTGCTTTTGGGATAGTTGGTCATTGATAGTGTATTCTATACTCTGACCATGTGGTTAGGAGTTTGATCCTTGTCACCATCATTCTTTTAGCTAAAAGTTGAATTTTTCCTCAAGGTAGGCAGTTAGTTTTGTTCATTGTTCGTACTTTTAGCTTAAATGGGCTAGTGTATGAGGGAGCGTTTATCTGCTGTGTTGTCTTTGATTCCTAAAGTTGAAGCTTCACTTTCCAAAGAGGACAGAATTATTTCAAGAAAAAAATGAGCTGCTGCCACCTCAAGGACTAACTTGGCAACATTAATGAGGTTTTAAAGAAACAGGGAAAAAAGCATTAATGACATGAAGAAAAAGTACAATTGAAGCAGCAACTTGAGGAATCAAACACAAACAGCGATCTGATTAAATGATGTTTCTTACCAACAATAGGTTGGAGCTACAAGTGTTTCAGTATTGCGAAGTGTGGCAGACTTTCTGGCTAAGTGAGAACTGGGATAGCAATGTTAATGTTTGTGATCAAATTGCTAATAGCCTAATGGAATTGGAAGAAAGATTTGAGGATTTCATTCTAAAGTTGAAAGAAGCAGAATGGGATACCCATCAATTAAATTTGAAGGTTCCCAAAGAAATCTTCATTGATGAAAATACCAATCCTCTCTAAATTCTAAAATGGTAAAGCAGAGAATGTTAAGTAGTGCAAAATGATATGACCATGAGGTCCTTCTTGAGTGTTGAGGCATAAAATGTGATCTACCAAAATGTAAATTCTGTGAGCAGTTTTGCAAGCATTCAGAGCAAGATATCTATTTTTCACATGCAGATATTCAACAAAGGGAGACCCGGTATTTATGGTGGCCAATTGGCTTATAGTCTTAACTCATTGAATACCAAATCCTGGCTTTTGTACTACATTCTTACTTTCTTAGGGAGGCTCCTATAGTAAAATTGTTCTCAATTTTGTTTAAAATCTTTCTAGTATGCAATTTTTTGGGAGAAGTTCTTTCATACTTGGTATTCAGCATTTCTGTGGGAGTACAGTTTGGTTAATCATGCTATCTGTAGTCTTAAAACAGTTCACTATTCT

>Glyma18g42930.4   sequence type=transcript   gene model=Glyma18g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAGGCTTTCACCATAGAAGCCAGGAAGGAACCAATCTATTCAAATTTTGCAACCTTTTCACAATTCAAACATAGGAACCTTGGAATTTTGCTGTTTTTTTTTATCAATGTCTCATACCTTGCAATTTTCATTTCTTTTCAAGTGCATTCAATTCTCCAATGAAGGTAGAGAAGATGAACAGAGTTAGGCCTCGTGGCTTTCAAATTCTATGCTCTTCTGAGCATTCCAGTTTCAAAGATGAAGATGATGCTGAAAATGGAGGGTCTGATACTTCTTTGTTTGGTTGTTTTGTTTTGCTGAGAAAACTTCAAAGGAGGTCAAGTTTCATCGCGGGTGATACAGGTGGAGAGATATAGCAATGGCTTCAACTATCCCTCTTGTGAGCAGATGTGTATTAGGTGATGATTTGCAGTTGCAAACCTTTCTTGTTGAGGAGGATACGTCTACGCCAAAAAGGTTCCAGGATTCATATTCCCCTGATGAAAGCCTATCCTGGCTTCCAGACACAATCAAAGATTTTATCCTACCAGCAGGCTTTCCTGGATCAGTTTCAGATGATTACTTGGATTACATGTTATTACAGTTCCCTACCAATGTGACTGGATGGATCTGTCACACCCTAGTCACTTCAAGTCTCCTAAAGGCCGTTGGTATTGGCTCTTTCTCTGGAACCTCAGCAACTGCTTCTGCTTCTGCCATCAGGTGGGTCTCTAAGGATGGCATTGGAGCTGTTGGACGATTATGCCTTGGTGGGCGGTTTGGAAGTCTTTTTGATGACGATCCTAAGCAATGGAGAATGTATGCGGACTTCATTGGCAGTGCTGGAAGCATTTTTTATCTGACAACCCAAGTATATCCTGACTATTTCCTTCCTTTGGCATCTCTTGGAAATCTTACCAAGGCTGTAGCGAGAGGACTAAAAGATCCTTCTTTTTGTGTGATTCAAAACCACTTTGCAATTTCAGGAAATCTAGGAGAGGTAGCCGCAAAGGAAGAAATTTGGGAAGTGGTTGCTCAACTGATTGGCCTTGCTTTAGGCATATTGATTCTGGATACACCCAGCCTTGTAAAATCATATGGTGTACTTTCATTACCTTGGTTGGGTATGCAGTTTCTGCATCTTTGGCTACGCTACAAATCACTTTCAGTTCTCCAGTTTAACACAATAAATCTAAAGCGTGTGTTACACTCTACTGTTCCAGGATGCACATATTGCAACCGAGAAGAGAATATATTAACTAGGTCGCAATTCATGAAGCCAAAAATAAATTTTGGCTTGCCCTTGGAGAAAATAGATGGCGTGGAGAGATCTCATTTTATGGTATAGGATCATTATTGCTGCTATTGTCACAATTTTATGAAGGAAACCAAGAGGTGGAAGCACTTCTAAAATTATATGCAAGTGAGAAATATATTCTCATGGTGAATCAGCAGCTGGAAGATTTGAGATTTTATGCTTCTTTCAAGGTTGGAGCTACAAGTGTTTCAGTATTGCGAAGTGTGGCAGACTTTCTGGCTAAGTGAGAACTGGGATAGCAATGTTAATGTTTGTGATCAAATTGCTAATAGCCTAATGGAATTGGAAGAAAGATTTGAGGATTTCATTCTAAAGTTGAAAGAAGCAGAATGGGATACCCATCAATTAAATTTGAAGGTTCCCAAAGAAATCTTCATTGATGAAAATACCAATCCTCTCTAAATTCTAAAATGGTAAAGCAGAGAATGTTAAGTAGTGCAAAATGATATGACCATGAGGTCCTTCTTGAGTGTTGAGGCATAAAATGTGATCTACCAAAATGTAAATTCTGTGAGCAGTTTTGCAAGCATTCAGAGCAAGATATCTATTTTTCACATGCAGATATTCAACAAAGGGAGACCCGGTATTTATGGTGGCCAATTGGCTTATAGTCTTAACTCATTGAATACCAAATCCTGGCTTTTGTACTACATTCTTACTTTCTTAGGGAGGCTCCTATAGTAAAATTGTTCTCAATTTTGTTTAAAATCTTTCTAGTATGCAATTTTTTGGGAGAAGTTCTTTCATACTTGGTATTCAGCATTTCTGTGGGAGTACAGTTTGGTTAATCATGCTATCTGTAGTCTTAAAACAGTTCACTATTCT

Coding sequences of Glyma18g42930

Limit To All Plant Sequences

>Glyma18g42930.2   sequence type=CDS   gene model=Glyma18g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAACTATCCCTCTTGTGAGCAGATGTGTATTAGGTGATGATTTGCAGTTGCAAACCTTTCTTGTTGAGGAGGATACGTCTACGCCAAAAAGGTTCCAGGATTCATATTCCCCTGATGAAAGCCTATCCTGGCTTCCAGACACAATCAAAGATTTTATCCTACCAGCAGGCTTTCCTGGATCAGTTTCAGATGATTACTTGGATTACATGTTATTACAGTTCCCTACCAATGTGACTGGATGGATCTGTCACACCCTAGTCACTTCAAGTCTCCTAAAGGCCGTTGGTATTGGCTCTTTCTCTGGAACCTCAGCAACTGCTTCTGCTTCTGCCATCAGGTGGGTCTCTAAGGATGGCATTGGAGCTGTTGGACGATTATGCCTTGGTGGGCGGTTTGGAAGTCTTTTTGATGACGATCCTAAGCAATGGAGAATGTATGCGGACTTCATTGGCAGTGCTGGAAGCATTTTTTATCTGACAACCCAAGTATATCCTGACTATTTCCTTCCTTTGGCATCTCTTGGAAATCTTACCAAGGCTGTAGCGAGAGGACTAAAAGATCCTTCTTTTTGTGTGATTCAAAACCACTTTGCAATTTCAGGAAATCTAGGAGAGGTAGCCGCAAAGGAAGAAATTTGGGAAGTGGTTGCTCAACTGATTGGCCTTGCTTTAGGCATATTGATTCTGGATACACCCAGCCTTGTAAAATCATATGGTGTACTTTCATTACCTTGGTTGGGTATGCAGTTTCTGCATCTTTGGCTACGCTACAAATCACTTTCAGTTCTCCAGTTTAACACAATAAATCTAAAGCGTGTGTTACACTCTACTGTTCCAGGATGCACATATTGCAACCGAGAAGAGAATATATTAACTAGGTCGCAATTCATGAAGCCAAAAATAAATTTTGGCTTGCCCTTGGAGAAAATAGATGGCGTGGAGAGATCTCATTTTATGGTGGAAGCACTTCTAAAATTATATGCAAGTGAGAAATATATTCTCATGGTGAATCAGCAGCTGGAAGATTTGAGATTTTATGCTTCTTTCAAGGTTGGAGCTACAAGTGTTTCAGTATTGCGAAGTGTGGCAGACTTTCTGGCTAAGTGA

>Glyma18g42930.3   sequence type=CDS   gene model=Glyma18g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAACTATCCCTCTTGTGAGCAGATGTGTATTAGGTGATGATTTGCAGTTGCAAACCTTTCTTGTTGAGGAGGATACGTCTACGCCAAAAAGGTTCCAGGATTCATATTCCCCTGATGAAAGCCTATCCTGGCTTCCAGACACAATCAAAGATTTTATCCTACCAGCAGGCTTTCCTGGATCAGTTTCAGATGATTACTTGGATTACATGTTATTACAGTTCCCTACCAATGTGACTGGATGGATCTGTCACACCCTAGTCACTTCAAGTCTCCTAAAGGCCGTTGGTATTGGCTCTTTCTCTGGAACCTCAGCAACTGCTTCTGCTTCTGCCATCAGGTGGGTCTCTAAGGATGGCATTGGAGCTGTTGGACGATTATGCCTTGGTGGGCGGTTTGGAAGTCTTTTTGATGACGATCCTAAGCAATGGAGAATGTATGCGGACTTCATTGGCAGTGCTGGAAGCATTTTTTATCTGACAACCCAAGTATATCCTGACTATTTCCTTCCTTTGGCATCTCTTGGAAATCTTACCAAGGCTGTAGCGAGAGGACTAAAAGATCCTTCTTTTTGTGTGATTCAAAACCACTTTGCAATTTCAGGAAATCTAGGAGAGGTAGCCGCAAAGGAAGAAATTTGGGAAGTGGTTGCTCAACTGATTGGCCTTGCTTTAGGCATATTGATTCTGGATACACCCAGCCTTGTAAAATCATATGGTGTACTTTCATTACCTTGGTTGGGTATGCAGTTTCTGCATCTTTGGCTACGCTACAAATCACTTTCAGTTCTCCAGTTTAACACAATAAATCTAAAGCGTGTGTTACACTCTACTGTTCCAGGATGCACATATTGCAACCGAGAAGAGAATATATTAACTAGGTCGCAATTCATGAAGCCAAAAATAAATTTTGGCTTGCCCTTGGAGAAAATAGATGGCGTGGAGAGATCTCATTTTATGGTGGAAGCACTTCTAAAATTATATGCAAGTGAGAAATATATTCTCATGGTGAATCAGCAGCTGGAAGATTTGAGATTTTATGCTTCTTTCAAGTTCACCTGA

>Glyma18g42930.4   sequence type=CDS   gene model=Glyma18g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAACTATCCCTCTTGTGAGCAGATGTGTATTAGGTGATGATTTGCAGTTGCAAACCTTTCTTGTTGAGGAGGATACGTCTACGCCAAAAAGGTTCCAGGATTCATATTCCCCTGATGAAAGCCTATCCTGGCTTCCAGACACAATCAAAGATTTTATCCTACCAGCAGGCTTTCCTGGATCAGTTTCAGATGATTACTTGGATTACATGTTATTACAGTTCCCTACCAATGTGACTGGATGGATCTGTCACACCCTAGTCACTTCAAGTCTCCTAAAGGCCGTTGGTATTGGCTCTTTCTCTGGAACCTCAGCAACTGCTTCTGCTTCTGCCATCAGGTGGGTCTCTAAGGATGGCATTGGAGCTGTTGGACGATTATGCCTTGGTGGGCGGTTTGGAAGTCTTTTTGATGACGATCCTAAGCAATGGAGAATGTATGCGGACTTCATTGGCAGTGCTGGAAGCATTTTTTATCTGACAACCCAAGTATATCCTGACTATTTCCTTCCTTTGGCATCTCTTGGAAATCTTACCAAGGCTGTAGCGAGAGGACTAAAAGATCCTTCTTTTTGTGTGATTCAAAACCACTTTGCAATTTCAGGAAATCTAGGAGAGGTAGCCGCAAAGGAAGAAATTTGGGAAGTGGTTGCTCAACTGATTGGCCTTGCTTTAGGCATATTGATTCTGGATACACCCAGCCTTGTAAAATCATATGGTGTACTTTCATTACCTTGGTTGGGTATGCAGTTTCTGCATCTTTGGCTACGCTACAAATCACTTTCAGTTCTCCAGTTTAACACAATAAATCTAAAGCGTGTGTTACACTCTACTGTTCCAGGATGCACATATTGCAACCGAGAAGAGAATATATTAACTAGGTCGCAATTCATGAAGCCAAAAATAAATTTTGGCTTGCCCTTGGAGAAAATAGATGGCGTGGAGAGATCTCATTTTATGGTATAG

Predicted protein sequences of Glyma18g42930

Limit To All Plant Sequences

>Glyma18g42930.2   sequence type=predicted peptide   gene model=Glyma18g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTIPLVSRCVLGDDLQLQTFLVEEDTSTPKRFQDSYSPDESLSWLPDTIKDFILPAGFPGSVSDDYLDYMLLQFPTNVTGWICHTLVTSSLLKAVGIGSFSGTSATASASAIRWVSKDGIGAVGRLCLGGRFGSLFDDDPKQWRMYADFIGSAGSIFYLTTQVYPDYFLPLASLGNLTKAVARGLKDPSFCVIQNHFAISGNLGEVAAKEEIWEVVAQLIGLALGILILDTPSLVKSYGVLSLPWLGMQFLHLWLRYKSLSVLQFNTINLKRVLHSTVPGCTYCNREENILTRSQFMKPKINFGLPLEKIDGVERSHFMVEALLKLYASEKYILMVNQQLEDLRFYASFKVGATSVSVLRSVADFLAK*

>Glyma18g42930.3   sequence type=predicted peptide   gene model=Glyma18g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTIPLVSRCVLGDDLQLQTFLVEEDTSTPKRFQDSYSPDESLSWLPDTIKDFILPAGFPGSVSDDYLDYMLLQFPTNVTGWICHTLVTSSLLKAVGIGSFSGTSATASASAIRWVSKDGIGAVGRLCLGGRFGSLFDDDPKQWRMYADFIGSAGSIFYLTTQVYPDYFLPLASLGNLTKAVARGLKDPSFCVIQNHFAISGNLGEVAAKEEIWEVVAQLIGLALGILILDTPSLVKSYGVLSLPWLGMQFLHLWLRYKSLSVLQFNTINLKRVLHSTVPGCTYCNREENILTRSQFMKPKINFGLPLEKIDGVERSHFMVEALLKLYASEKYILMVNQQLEDLRFYASFKFT*

>Glyma18g42930.4   sequence type=predicted peptide   gene model=Glyma18g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTIPLVSRCVLGDDLQLQTFLVEEDTSTPKRFQDSYSPDESLSWLPDTIKDFILPAGFPGSVSDDYLDYMLLQFPTNVTGWICHTLVTSSLLKAVGIGSFSGTSATASASAIRWVSKDGIGAVGRLCLGGRFGSLFDDDPKQWRMYADFIGSAGSIFYLTTQVYPDYFLPLASLGNLTKAVARGLKDPSFCVIQNHFAISGNLGEVAAKEEIWEVVAQLIGLALGILILDTPSLVKSYGVLSLPWLGMQFLHLWLRYKSLSVLQFNTINLKRVLHSTVPGCTYCNREENILTRSQFMKPKINFGLPLEKIDGVERSHFMV*

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