Report for Sequence Feature Glyma18g42920
Feature Type: gene_model
Chromosome: Gm18
Start: 52202537
stop: 52206109
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g42920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G01520 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:206797-208399 FORWARD LENGTH=242
SoyBase E_val: 3.00E-121 ISS
GO:0015996 GO-bp
Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1039
KOG
Predicted E3 ubiquitin ligase
JGI ISS
PTHR15067 Panther
FAMILY NOT NAMED
JGI ISS
PTHR15067:SF7 Panther
ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI
JGI ISS
UniRef100_G7JN27 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JN27_MEDTR
SoyBase E_val: 2.00E-134 ISS
UniRef100_UPI000233F287 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F287 related cluster n=1 Tax=unknown RepID=UPI000233F287
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g42920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g42920
Paralog Evidence Comments
Glyma07g18080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g42920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g200100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g42920
Coding sequences of Glyma18g42920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g42920.1 sequence type=CDS gene model=Glyma18g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTTTGGCCTGAAAAGGAGGAAGAAGAGAGGAGAAGGAGAAGGAAAGATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGAGTATCCAAGTGCTGGTGCTTGCTTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTGGTTAAGTGGACTGACTGTCACCTTGCTGGAGCTTTAGGATTGCTCAGAATTCTTATATACAAGGCATATGAAGATGGGAAGACAACCATATCCATTTATGAAAGAAAAGCCAGTCTGAAGGAATTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGATGACCGGAAACAAAAACATCTATGTGCTACTAAGTATAAGCATAAAGATTTGACAAGCAAAGGAAAGCTTCCTGAGATTGACATGGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCAATCATTCAATGTGTATGAAATGCTATGAAGACTGGCATGCAAGATCTCAGTCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTGAACTCTGATGACCTTTGGATCTGCATTAGCAGCAGTGAGATTAATGACTTGGCTTCGATCAACAAGGAGAATTTGAAAAGACTATTTATGTACATAGAAAGTTTGCCTCTCACTGCCAGACCCCATATTCAGCATGTCATATCATCACCACCAGTGATTGCCAATTAG
Predicted protein sequences of Glyma18g42920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g42920.1 sequence type=predicted peptide gene model=Glyma18g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGFGLKRRKKRGEGEGKMRKSFKDSLKALEADIQFANTLASEYPSAGACFQMRLSYSPAAQFFLFLVKWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATKYKHKDLTSKGKLPEIDMEREEECGICLEMNSMVVLPNCNHSMCMKCYEDWHARSQSCPFCRDSLKRVNSDDLWICISSSEINDLASINKENLKRLFMYIESLPLTARPHIQHVISSPPVIAN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
