Glyma18g42810 - SoyBase

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Report for Sequence Feature Glyma18g42810

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52115954
stop:	52122736
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09010	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr3:2750285-2752086 FORWARD LENGTH=393	SoyBase	E_val: 4.00E-176	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009581	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of external stimulus	SoyBase	N/A	ISS
GO:0009595	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0580	KOG	Serine/threonine protein kinase	JGI		ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF679	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_I1KKD2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKD2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8LF75	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase domain-containing protein n=3 Tax=Arabidopsis thaliana RepID=Q8LF75_ARATH	SoyBase	E_val: 2.00E-173	ISS

Expression Patterns of Glyma18g42810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42810

Paralog	Evidence	Comments
Glyma07g18021	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g199600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g42810

Limit To All Plant Sequences

>Glyma18g42810.4   sequence type=transcript   gene model=Glyma18g42810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAATAAAAGTAAAAAAAACAAAACAAAACAAAGGGCAGATACTTGTCCCTTTCATAGTTTAACCCCGACTTTGTTAGATCTTTGCTGTCTTTCCTTTCTGTTGATAGCTTTCTTGACCCGTCGTTTCATCTTTCCATTTCCTAACCATTTATGGATTCACACGTTCCTGCCAACCCTGCAACACAGCTACCTCACATAAACTATCGAAGCTTTGGTTACTTTTCTCTGTATAAGAGTTAAAACCACAGTTTTTCAACGTTTTTAAACCCCCATCAGGTTGAAAACTCAGGCTAGGATTTTGGTTATAACAGTGATTCAAATTTCAAACCATGCTGTGAATTCTTTTACCCCTGCAGTGTATTCAAGTTTCCAACTTGCTTCATTCTTTTCCAAGGTAGTTGGATTGAGTGTCTTGTTTTCATCCTGGTTGGTAGTTGGTGCATGTGATAAATTTGAGGGACAAATGTTGTTACAAGGTTTAATGGGGGTGTAGGAGACTGGAGCTGGGGCCATAGTCATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGAAGGAGGGATGATCCTGAAGAGCAGCCTCATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACTCGAGATTTTCATCCTTCAAGTAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTGTTGAGGGCGGTCACCGAATATTGGTTTATGAATTTTTGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATGGGAGCTTTAATCCGAAAATTGGGGACTTTGGTCTGGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGATGTGTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGATTATTTGGTTTTGGTGGAATGGGTAACTGAAAAACCCAGAAAATCCAAAGCTTAGCATATCAATTAAAATAAAGAGGATAGAAAGCGAAGGAGCTTGCACAGCTGGTTTTATACTGGTTTGGCCCAGGGTGGAACTTGCATTCAGTTCCGCATAAGAGGCTTGGAAGCTGAAAGGAGAAAATAGGCTTCTGGACCTTGTTGATTCAGAACTAAGTGAATATGATGAGAGTGTGGTGTACCGGTTCCTTATAGTGGCTCTATTTTGCACCCAATCAGCAGCTCAACATAGACCAAGCATGAAGCAAGTATTGGAAATGCTTTCCAAGGAAGTTCATCTCAATGAGAAGGCATTGACTGAGCCTGGAATTTACAGATGGCACAGCACTGGAAAGAAGTGTGGTTCTTTGAATGAGACATCATCTTCTCAAGCAATCAAGTACAAAAGAACCGAAAATCCGCATGAAGCAAATTCAACTCACTTTAGTGGTACAGATATTGTGACAGAGATGCTTCCAAGATGATGATGGTTACATGTGTATGTGGTGTTAGGGTATATATTAGTAGGATGTGGTCATACTTGTCATTGTAGTAATTAGGAATAAGATCAATGTGTTTCCAAAGGGAAATATAAGATCCTGGGAAGAAAGGCCTTATTTCATTAGCATGTACATATGTGTGTGCATATACATATTTTCACTTTGCTAATTATGTTTCTGCTGTTAGCCTAAAGGTGTGATGATGATCTTATTTCTTGTGTTGTGCGCTCCTCTGTTCTACTTTCAACCTGTCTAACAAGTCATTTGATTGAATGTGGTCAAGTTATAGTGATTAATAGACAACCTGGAG

>Glyma18g42810.5   sequence type=transcript   gene model=Glyma18g42810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAATAAAAGTAAAAAAAACAAAACAAAACAAAGGGCAGATACTTGTCCCTTTCATAGTTTAACCCCGACTTTGTTAGATCTTTGCTGTCTTTCCTTTCTGTTGATAGCTTTCTTGACCCGTCGTTTCATCTTTCCATTTCCTAACCATTTATGGATTCACACGTTCCTGCCAACCCTGCAACACAGCTACCTCACATAAACTATCGAAGCTTTGGTTACTTTTCTCTGTATAAGAGTTAAAACCACAGTTTTTCAACGTTTTTAAACCCCCATCAGGTTGAAAACTCAGGCTAGGATTTTGGTTATAACAGTGATTCAAATTTCAAACCATGCTGTGAATTCTTTTACCCCTGCAGTGTATTCAAGTTTCCAACTTGCTTCATTCTTTTCCAAGGTAGTTGGATTGAGTGTCTTGTTTTCATCCTGGTTGGTAGTTGGTGCATGTGATAAATTTGAGGGACAAATGTTGTTACAAGGTTTAATGGGGGTGTAGGAGACTGGAGCTGGGGCCATAGTCATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGAAGGAGGGATGATCCTGAAGAGCAGCCTCATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACTCGAGATTTTCATCCTTCAAGTAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTGTTGAGGGCGGTCACCGAATATTGGTTTATGAATTTTTGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATGGGAGCTTTAATCCGAAAATTGGGGACTTTGGTCTGGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTTTTACCTCTTCTGTTGCAGGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGATGTGTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGATTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGGAGAAAATAGGCTTCTGGACCTTGTTGATTCAGAACTAAGTGAATATGATGAGAGTGTGGTGTACCGGTTCCTTATAGTGGCTCTATTTTGCACCCAATCAGCAGCTCAACATAGACCAAGCATGAAGCAAGTATTGGAAATGCTTTCCAAGGAAGTTCATCTCAATGAGAAGGCATTGACTGAGCCTGGAATTTACAGATGGCACAGCACTGGAAAGAAGTGTGGTTCTTTGAATGAGACATCATCTTCTCAAGCAATCAAGTACAAAAGAACCGAAAATCCGCATGAAGCAAATTCAACTCACTTTAGTGGTACAGATATTGTGACAGAGATGCTTCCAAGATGATGATGGTTACATGTGTATGTGGTGTTAGGGTATATATTAGTAGGATGTGGTCATACTTGTCATTGTAGTAATTAGGAATAAGATCAATGTGTTTCCAAAGGGAAATATAAGATCCTGGGAAGAAAGGCCTTATTTCATTAGCATGTACATATGTGTGTGCATATACATATTTTCACTTTGCTAATTATGTTTCTGCTGTTAGCCTAAAGGTGTGATGATGATCTTATTTCTTGTGTTGTGCGCTCCTCTGTTCTACTTTCAACCTGTCTAACAAGTCATTTGATTGAATGTGGTCAAGTTATAGTGATTAATAGACAACCTGGAG

Coding sequences of Glyma18g42810

Limit To All Plant Sequences

>Glyma18g42810.3   sequence type=CDS   gene model=Glyma18g42810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGAAGGAGGGATGATCCTGAAGAGCAGCCTCATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACTCGAGATTTTCATCCTTCAAGTAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTGTTGAGGGCGGTCACCGAATATTGGTTTATGAATTTTTGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATGGGAGCTTTAATCCGAAAATTGGGGACTTTGGTCTGGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGATGTGTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGATTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGGAGAAAATAGGCTTCTGGACCTTGTTGATTCAGAACTAAGTGAATATGATGAGAGTGTGGTGTACCGGTTCCTTATAGTGGCTCTATTTTGCACCCAATCAGCAGCTCAACATAGACCAAGCATGAAGCAAGTATTGGAAATGCTTTCCAAGGAAGTTCATCTCAATGAGAAGGCATTGACTGAGCCTGGAATTTACAGATGGCACAGCACTGGAAAGAAGTGTGGTTCTTTGAATGAGACATCATCTTCTCAAGCAATCAAGTACAAAAGAACCGAAAATCCGCATGAAGCAAATTCAACTCACTTTAGTGGTACAGATATTGTGACAGAGATGCTTCCAAGATGA

>Glyma18g42810.4   sequence type=CDS   gene model=Glyma18g42810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGAAGGAGGGATGATCCTGAAGAGCAGCCTCATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACTCGAGATTTTCATCCTTCAAGTAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTGTTGAGGGCGGTCACCGAATATTGGTTTATGAATTTTTGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATGGGAGCTTTAATCCGAAAATTGGGGACTTTGGTCTGGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGATGTGTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGATTATTTGGTTTTGGTGGAATGGGTAACTGAAAAACCCAGAAAATCCAAAGCTTAG

>Glyma18g42810.5   sequence type=CDS   gene model=Glyma18g42810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGAAGGAGGGATGATCCTGAAGAGCAGCCTCATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACTCGAGATTTTCATCCTTCAAGTAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTGTTGAGGGCGGTCACCGAATATTGGTTTATGAATTTTTGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATGGGAGCTTTAATCCGAAAATTGGGGACTTTGGTCTGGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTTTTACCTCTTCTGTTGCAGGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGATGTGTACAGTTTTGGGATTCTCATGCTTGA

Predicted protein sequences of Glyma18g42810

Limit To All Plant Sequences

>Glyma18g42810.3   sequence type=predicted peptide   gene model=Glyma18g42810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCNWFGALNWCGRRDDPEEQPHEQVVATKKFSYNSLRSATRDFHPSSKIGGGGYGVVYKGVLRDGTQAAIKSLSVESKQGTHEFMTEIDMISNIRHPNLVELIGCCVEGGHRILVYEFLENNSLASSLLGSKGKYVALDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDGSFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSIAAFEEDYLVLVEWAWKLKGENRLLDLVDSELSEYDESVVYRFLIVALFCTQSAAQHRPSMKQVLEMLSKEVHLNEKALTEPGIYRWHSTGKKCGSLNETSSSQAIKYKRTENPHEANSTHFSGTDIVTEMLPR*

>Glyma18g42810.4   sequence type=predicted peptide   gene model=Glyma18g42810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCNWFGALNWCGRRDDPEEQPHEQVVATKKFSYNSLRSATRDFHPSSKIGGGGYGVVYKGVLRDGTQAAIKSLSVESKQGTHEFMTEIDMISNIRHPNLVELIGCCVEGGHRILVYEFLENNSLASSLLGSKGKYVALDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDGSFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSIAAFEEDYLVLVEWVTEKPRKSKA*

>Glyma18g42810.5   sequence type=predicted peptide   gene model=Glyma18g42810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCNWFGALNWCGRRDDPEEQPHEQVVATKKFSYNSLRSATRDFHPSSKIGGGGYGVVYKGVLRDGTQAAIKSLSVESKQGTHEFMTEIDMISNIRHPNLVELIGCCVEGGHRILVYEFLENNSLASSLLGSKGKYVALDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDGSFNPKIGDFGLAKLFPDNVTHVSTRVAGTVLPLLLQGISCTRICTSGTTYKEGRCVQFWDSHA*

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