Glyma18g42801 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g42801

Feature Type:	gene_model
Chromosome:	Gm18
Start:	52111854
stop:	52112976
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42801

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF03140	PFAM	Plant protein of unknown function	JGI		ISS
UniRef100_I1MXK6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXK6_SOYBN	SoyBase	E_val: 6.00E-35	ISS

Expression Patterns of Glyma18g42801

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g42801 not represented in the dataset	Glyma18g42801 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g42801 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g199500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42801

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g42801

Limit To All Plant Sequences

>Glyma18g42801.1   sequence type=CDS   gene model=Glyma18g42801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTGTAAGGCAACAATATTGTCAACAGTACAACATTCTCCTTGTTTTGAAGGAGCTTTGGAGATCAAACGAAGAATTATTCAAGCCAAGGAAGGTGTCCATCGAGTCTCGATACAAGGGAAGAAGGGAATTACTTCAAATGGAAGGGCTTAAGTGGCGTTGCATGATCTTCCTTCTTATTCGAACAAATCAAAATGCAACAGAAATTCTAGAAACTTTTATGTGTGTCATGTTGGAGCACAACACAACGGTTCATGCAAGCTATGTTGAAGAAATCAAACTCGACGGGTTCGATCTGGCCACAATTATGATACGTGACAAATGTTTTCTATTAGAGCTTTTCATTTCTCAATTAAATGAATGGAATTCAAAATTACTTTCTTTGTTTTATATTAGTATTACACAACATCTAGCTCTGTCTTACCTTGTTGACTACTCTCCAGATTCAAGCTCTACCTCTAATTCCACCCTCGTTGATGTCGTTCATCTTCTTGAACTTGCTCACTTGACCATTTTCAGGAAGAGTCTTTGA

Predicted protein sequences of Glyma18g42801

Limit To All Plant Sequences

>Glyma18g42801.1   sequence type=predicted peptide   gene model=Glyma18g42801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVRQQYCQQYNILLVLKELWRSNEELFKPRKVSIESRYKGRRELLQMEGLKWRCMIFLLIRTNQNATEILETFMCVMLEHNTTVHASYVEEIKLDGFDLATIMIRDKCFLLELFISQLNEWNSKLLSLFYISITQHLALSYLVDYSPDSSSTSNSTLVDVVHLLELAHLTIFRKSL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain