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Report for Sequence Feature Glyma18g42781

Feature Type:gene_model
Chromosome:Gm18
Start:52087679
stop:52089007
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g42781
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01260AT Annotation by Michelle Graham. TAIR10: Carbohydrate-binding-like fold | chr5:105367-106488 FORWARD LENGTH=306 SoyBaseE_val: 1.00E-40ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0010264GO-bp Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
GO:2001070GO-mf Annotation by Michelle Graham. GO Molecular Function: starch binding SoyBaseN/AISS
PTHR10357Panther AMYLASE JGI ISS
PTHR10357:SF64Panther NEOPULLULANASE-RELATED JGI ISS
PF00686PFAM Starch binding domain JGI ISS
UniRef100_G7JN22UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alpha-amylase n=1 Tax=Medicago truncatula RepID=G7JN22_MEDTR SoyBaseE_val: 3.00E-53ISS
UniRef100_I1J7A4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J7A4_SOYBN SoyBaseE_val: 3.00E-76ISS

Expression Patterns of Glyma18g42781
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g42781 not represented in the dataset
Glyma18g42781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42781
ParalogEvidenceComments
Glyma07g17931 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42781 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g199300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g42781
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g42781
>Glyma18g42781.1   sequence type=CDS   gene model=Glyma18g42781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCCCACTTCCACTCTCAATAACACACAATTAAGTTTAATTTGCCAACAACAACAAAAGCTTATACTACAAAGGAGTAAACGGTTGTTTCTTTGTGACCAAGCTTCACTCCATCAACATCAAGTGATGGCCCTCAACACCTCTTGCTCCAAGGCCATTGTTGACATGCTAGGAACTCATGTTCCTAAATGTGCTATTGATGTTTCCAACACACCCAGATTTTCCTTGTCCCAGAATGACAAAAAGGGCTGCAACTTGGGATTCCCCAAACTTGTTCAAAACAAGGGCCTTTTCCCACTTCATGCTGTGCCATCCAAAACAATGGTGGACTTGGACAATTTGGTGCTTCAATCTCAAGAAAAACCAAAGGAATCAAAGACAATAAATGTCAAATTTCAGTTACAATGCAATTGTAATTATGGGGAACAATTTCTAGTAGTTGGTAATGATCCTATGTTTGGTTCATGGAACCCTGAAAAGGCCATACCAATGACATGGTCAGAAGGGCATGTGTGGACTGCAGAGATGGGTGTACCTGTTGGAAAATACCAATTCAAAATCATCCTGAAAACAGCAGAAGGTGAGATTGTTTGGCAGCCAGGGCCAGATAGAAACCTCCACACATGGGAAGCAATGAACAGAATCACTGTTTGTGAGTATTGGGACAATGCTGAGCAACAGAAAGTAACAGAAGATGATGAAGTTCCCAACACAATGGAGGAAGATCAACTTGCTCGCACAAACAAGGAATTACAGATGGAGTCAGAAATGCCAAATTTTGCTGAGAATTTGGGTAATCCTAAAGAGAAGCTGAAATCAAGGCAGCCAAAGTGCTAA
Predicted protein sequences of Glyma18g42781
>Glyma18g42781.1   sequence type=predicted peptide   gene model=Glyma18g42781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPTSTLNNTQLSLICQQQQKLILQRSKRLFLCDQASLHQHQVMALNTSCSKAIVDMLGTHVPKCAIDVSNTPRFSLSQNDKKGCNLGFPKLVQNKGLFPLHAVPSKTMVDLDNLVLQSQEKPKESKTINVKFQLQCNCNYGEQFLVVGNDPMFGSWNPEKAIPMTWSEGHVWTAEMGVPVGKYQFKIILKTAEGEIVWQPGPDRNLHTWEAMNRITVCEYWDNAEQQKVTEDDEVPNTMEEDQLARTNKELQMESEMPNFAENLGNPKEKLKSRQPKC*






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