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Report for Sequence Feature Glyma18g42590

Feature Type:gene_model
Chromosome:Gm18
Start:51793703
stop:51796171
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g42590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14420AT Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein | chr3:4821861-4823899 FORWARD LENGTH=348 SoyBaseE_val: 1.00E-88ISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008891GO-mf Annotation by Michelle Graham. GO Molecular Function: glycolate oxidase activity SoyBaseN/AISS
GO:0010181GO-mf Annotation by Michelle Graham. GO Molecular Function: FMN binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG0538 KOG Glycolate oxidase JGI ISS
PTHR10578Panther (S)-2-HYDROXY-ACID OXIDASE-RELATED JGI ISS
PTHR10578:SF9Panther L-LACTATE-2-MONOXYGENASE JGI ISS
PF01070PFAM FMN-dependent dehydrogenase JGI ISS
UniRef100_D7EZN6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycolate oxidase n=1 Tax=Mikania micrantha RepID=D7EZN6_9ASTR SoyBaseE_val: 1.00E-88ISS
UniRef100_I1N2V0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N2V0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g42590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g42590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g42590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g42590
>Glyma18g42590.1   sequence type=CDS   gene model=Glyma18g42590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTCAACTCTCCTCTCCTTTAATATATCTCCAAAAATACTTGGAATAAAAATAAAGCTATGCACAAAAGAATCAACTACTGCTAAAGCAACATCAACAGCTAGCACAATTATGACACTATCCTCATGGGCTATTTCCAGTGTTGAGGAGGTTGCTTCAATAGGCCTTGACATTCATTTTTTTCAACTTTATCTTGTGAGAAGAGCTGAAAGAGTTGGTTTCAAGGCAATTGCCTTTACTATGGACATTGATATTCTTGGTCGTGGGGAGGTTGACATCAAAAATAGTGTGTTTTATAAATTTACATTGCCACCAAACTTGGTTTTGAAGAATTTTGAAGGATTGGATCTTGGAAAGCTAGACAAGGTTGACTCTGGTCTTGCCTCTTATGTTGCTGGACAAATTGATCGCAATAACATGTACAACCTTTTAAGGGTGTACTTAGTGCTCAAGATATTGCTTGAATCATTGTTTTCCAATCATGGAGCTCATCAACTTAATTGTGTCCCTGCAACTATTATGGCTTTGGAAGAGTTAAAGTTGCATAAAGGAAAAATTCCAGAATTTTTGCATGGTGGAATTCGTCGAGGGACATATGTTTTTAATGCCCTAGCTCTTGAAGCAGCCGGTGTATTCGTAAATGGTGAGGCTAGTGTGAGAAAAGTACTTCAAATGCTCCGTGATGAATTTGAACTAACAATGGTGCTAAGTGGTTGGCATTCGCTCAAGGTGATAACTCATAACCATGTTGTCATAGAGTGGGATCACCCAAGATTTGCTCTGAAGTTATAA
Predicted protein sequences of Glyma18g42590
>Glyma18g42590.1   sequence type=predicted peptide   gene model=Glyma18g42590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YSTLLSFNISPKILGIKIKLCTKESTTAKATSTASTIMTLSSWAISSVEEVASIGLDIHFFQLYLVRRAERVGFKAIAFTMDIDILGRGEVDIKNSVFYKFTLPPNLVLKNFEGLDLGKLDKVDSGLASYVAGQIDRNNMYNLLRVYLVLKILLESLFSNHGAHQLNCVPATIMALEELKLHKGKIPEFLHGGIRRGTYVFNALALEAAGVFVNGEASVRKVLQMLRDEFELTMVLSGWHSLKVITHNHVVIEWDHPRFALKL*






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