Glyma18g42540 - SoyBase

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Report for Sequence Feature Glyma18g42540

Feature Type:	gene_model
Chromosome:	Gm18
Start:	51689995
stop:	51695226
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01220	AT	Annotation by Michelle Graham. TAIR10: sulfoquinovosyldiacylglycerol 2 \| chr5:86907-89885 REVERSE LENGTH=510	SoyBase	E_val: 0	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009247	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolipid biosynthetic process	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0046506	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfolipid biosynthetic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0046510	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity	SoyBase	N/A	ISS
KOG1111	KOG	N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase	JGI		ISS
PTHR12526	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR12526:SF168	Panther		JGI		ISS
PF00534	PFAM	Glycosyl transferases group 1	JGI		ISS
UniRef100_G7L6J3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit n=1 Tax=Medicago truncatula RepID=G7L6J3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N2U7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N2U7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g42540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42540

Paralog	Evidence	Comments
Glyma07g17680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g197600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g42540

Limit To All Plant Sequences

>Glyma18g42540.1   sequence type=CDS   gene model=Glyma18g42540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACCACTGCAATCACTATAAATCCCTCACTCTCTCCACCCTTTTGTTCCAAAGCCACTACCCCTCCTTCTTGTTCTTCATCATCTTCTTCGTTCCCTCCTAGTTTCCCACGTTTTCACTTGTCGGGAGCAAAACCCATTTCTCTTTCTTGCAGAGGAACACGATTGTGCTTCTTGAAAGGGTCTAAAACTCTTTGGGGTAGAAAAAGTTTTGTGCTTGGGGCTGGAAACATGACCATGGCAGAGGTTGATTCTCATGAAGAGGGGGAGAACGAGGGTGCTTTGGTTGGCTCTGAGAATGAGAACAATTCAAGGCCTCGGAGAATTGCTCTCTTTGTCGAGCCTTCTCCCTTTGCATATGTCTCAGGCTACAAAAACCGGTTTCAGAACTTTATTAGATGCCTACGTGAAATGGGTGATGAGGTGATGGTCGTGACAACACATGAAGGAGTGCCACAGGAATTTTATGGAGCCAAATTAATTGGATCTTGGAGCTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCGGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGGTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGTGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAAATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTGCGGGGGATCTCCTAGCAGCTAGAGTCACAGCAGCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAGGCTCATGGATAGGCTTCCTGATGCCCGAATTGCTTTCGTTGGTGATGGACCATACAGGGAAGAACTAGAGAAAATGTTTGAAGGTATGCCAGCAGTATTCACTGGAATGTTAGGAGGAGAAGAACTGTCCCAAGCATATGCCAGTGGAGATGTATTTGTCATGCCTTCAGAGTCAGAGACGCTTGGTTTTGTAGTTTTGGAGGCGATGTCTTCAGGGATACCTGTGGTGGCGGCACGTGCTGGAGGTATTCCTGATATAATCCCTGCAGATCAAGATGGTAAAACTAGCTATCTGTATGATCCAGGAGATCTTGAAGACTGCTTGAGCAAACTAAGGCCCCTTTTGCACAACAAAGAGTTGAGAGAAACCATGGGTAAAGCTGCACGTGAAGAGATGGAAAAGTATGATTGGAAGGCAGCCACGCGAAAGATTCGCAACGAACAATACAACGCTGCCATTTGGTTCTGGCGCAAGAAAAGAGCCCAACTATTGAGACCCTTCCAACGGCTGGCAAAACATTTTTTCCCATCCCCACAAGTCAACTATAGGTGA

Predicted protein sequences of Glyma18g42540

Limit To All Plant Sequences

>Glyma18g42540.1   sequence type=predicted peptide   gene model=Glyma18g42540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTTAITINPSLSPPFCSKATTPPSCSSSSSSFPPSFPRFHLSGAKPISLSCRGTRLCFLKGSKTLWGRKSFVLGAGNMTMAEVDSHEEGENEGALVGSENENNSRPRRIALFVEPSPFAYVSGYKNRFQNFIRCLREMGDEVMVVTTHEGVPQEFYGAKLIGSWSFPCPLYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLIIKFLHRAADLTLVPSAAIAGDLLAARVTAANKIRLWNKGVDSEKFHPKYRSHEMRLRLSNDEPDKPLIIHVGRLGVEKSLDFLKRLMDRLPDARIAFVGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGIPVVAARAGGIPDIIPADQDGKTSYLYDPGDLEDCLSKLRPLLHNKELRETMGKAAREEMEKYDWKAATRKIRNEQYNAAIWFWRKKRAQLLRPFQRLAKHFFPSPQVNYR*

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