Glyma18g42480 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g42480

Feature Type:	gene_model
Chromosome:	Gm18
Start:	51609463
stop:	51611501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09050	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 47 species: Archae - 4; Bacteria - 10; Metazoa - 33; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). \| chr3:2764860-2765907 FORWARD LENGTH=258	SoyBase	E_val: 3.00E-80	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N2U4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2U4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g42480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42480

Paralog	Evidence	Comments
Glyma07g17631	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g197300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g42480

Limit To All Plant Sequences

>Glyma18g42480.1   sequence type=CDS   gene model=Glyma18g42480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGCACTCAAATCCCTTCATCCTTTCTTCACTCCTACCAATATCAAATATGGTATCAACCGAAGCAGATGCCTCAACACAAAAGGTTCTGTTTTGTGCCTCTGCAAGTCCAATGAATCTGAATCTCAAGCTCCCCAACCAGGAGATATTCGTAAACAAGAACTGCTAGCCCAAATTGCCATGCTTCAAACTCAGAAAGTCCGTCTCACAGATTATTTTGATGAGAGATCTGAATACTTAACCCAGTTTGGTGAAGAAGCCAAGGCCGAGTTTGACAAGATTGGAAAAGATGCCCTCCAAGGATTAGATGAAGCTAGTGCCATTATAACAGCAAACATAGAGAGCCAGATGGTGGAGTTTGAGGAATCTGCAGAACTTAACAGACAAGAGATTCAGGAGCATGAAAAAGAACTAGGTGAATTTGAAGTTCAAATGGAGGATGGAAGAAATGAAGGGCTGTTCTTTAAGAACCTCAGAAGGAGGACACCTGTTGACAAATCAAAAGCCAAGGAGGAGGCAGAGAAAATCAAAGATGTAGCCAGAGAAAAAGCTGGTAGCAGAACAAGGAAAGGCTTTTACCTCCTCTTTATTGGCCTACTGACCTTTGCAATAGTTGATTCTATTGCCTCATCATCAACTGATTGGAAAAAAATAGCAGTTCTTGGAGCTACTCTTGTGGCTTTAGTTTCTCAGTTCATCTACGAACAGAATGTCATTAGAAACTGGAGAAAAAAGAAAGACCGACACAGAAGAGGAAAATAA

Predicted protein sequences of Glyma18g42480

Limit To All Plant Sequences

>Glyma18g42480.1   sequence type=predicted peptide   gene model=Glyma18g42480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIALKSLHPFFTPTNIKYGINRSRCLNTKGSVLCLCKSNESESQAPQPGDIRKQELLAQIAMLQTQKVRLTDYFDERSEYLTQFGEEAKAEFDKIGKDALQGLDEASAIITANIESQMVEFEESAELNRQEIQEHEKELGEFEVQMEDGRNEGLFFKNLRRRTPVDKSKAKEEAEKIKDVAREKAGSRTRKGFYLLFIGLLTFAIVDSIASSSTDWKKIAVLGATLVALVSQFIYEQNVIRNWRKKKDRHRRGK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain