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Report for Sequence Feature Glyma18g42425

Feature Type:gene_model
Chromosome:Gm18
Start:51451665
stop:51455811
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g42425
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09070AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF740) | chr3:2768880-2770937 REVERSE LENGTH=685 SoyBaseE_val: 6.00E-35ISS
GO:0010088GO-bp Annotation by Michelle Graham. GO Biological Process: phloem development SoyBaseN/AISS
GO:0010233GO-bp Annotation by Michelle Graham. GO Biological Process: phloem transport SoyBaseN/AISS
GO:0010588GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation SoyBaseN/AISS
GO:0022622GO-bp Annotation by Michelle Graham. GO Biological Process: root system development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016324GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05340PFAM Protein of unknown function (DUF740) JGI ISS
UniRef100_D7M754UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M754_ARALL SoyBaseE_val: 1.00E-28ISS
UniRef100_UPI000233869EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233869E related cluster n=1 Tax=unknown RepID=UPI000233869E SoyBaseE_val: 2.00E-93ISS

Expression Patterns of Glyma18g42425
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g42425 not represented in the dataset
Glyma18g42425 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42425
ParalogEvidenceComments
Glyma07g17490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42425 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g42425
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g42425
>Glyma18g42425.1   sequence type=CDS   gene model=Glyma18g42425   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCCACCACCCAACCCCCACCGTCGTTGCCGCCACCGCCGTTTCCGCCGCCGCCGCCGCAGCTTCTCCAACCCCACCGCCCCTCCACCTCCTGCGACCGCCACCCGCAGGAGAACTTCACCGGCTTCTGCCCTTCATGCCTCTGCGAGCGCCTCGCCGTGCTCGATCCCAACTCCAACTCCTCCTCCTCTGCTGCCCGCAAGCCGCCAACTTCCTCCACCGCCGCCGCCGCCCTTAAGGCCATCTTCCGCCCCTCCGCCGCCGCCCGCAACCGCCCTCCCCCCTCCTCATCATCCTTCCTCCCGGAGCTCCGCCGCACAAAATCCTTCTCCGCCTCCAAAAACGAAGCCCTCTCCGGTTTCTTCGAACCGCAGAGAAAATCCTGCGACGTCCGCGCCCGCAGCACCCTCTTCTCCCTCTTCAACCAAGAAGCCGCCGCCTTCGTCGAGCTCGAAACCCGGCACAACCTCCCCTCCTCCTCCATCGTTCAGAAACCAGTCCTCGAGTTCGAAGAAGAAGAAGAAGAAGAACAAGGCAACAACATTATCGTTCACGACAACGACACTAGGGTTCCAGACTCACTACAACTACAATCAGAACCAGAAGTAACCAATAACACCTTCACTGAACACAGAGTTTCGGTTTCGGAAATCGTAGAAGAGGAACCGGAGATAGTGCCAGAACCCGAAGCTGACAGGTCATACTCGGAGTCGTGGCAGGAGTATAGAGGAGGAGTAGGGGAGAGGAATGGGGATGTGAGGAGTGGTGGTTTTAATCCCAAGTTGATGAGGAGTAATAGCAGTGTGAGTTGGAGGAACGGGCAGGGTATGATAGGTGGTGGTGGAGGGTTTGGGAATGTGAGTATGAGGAAGAGTGATGTGCAAGGGAATGGGCTTGGACTTGAACTTGGGGGTAGGAAGGGGAGGGACGAGTTTGTTGGGTTGGAGAGGAACCGTCGTGCAAGGTATTCCTCGCCGAACAGCATTGATAACAATGGTTTATTGAGGCTCTATTTGGGCAGCCGGAGAAACGGGTCTGGCAAAGGAAGGTCGAACCAGGCACATTCTATTGCCAGAAGCGTACTTCGATTGTATTAA
Predicted protein sequences of Glyma18g42425
>Glyma18g42425.1   sequence type=predicted peptide   gene model=Glyma18g42425   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPTTQPPPSLPPPPFPPPPPQLLQPHRPSTSCDRHPQENFTGFCPSCLCERLAVLDPNSNSSSSAARKPPTSSTAAAALKAIFRPSAAARNRPPPSSSSFLPELRRTKSFSASKNEALSGFFEPQRKSCDVRARSTLFSLFNQEAAAFVELETRHNLPSSSIVQKPVLEFEEEEEEEQGNNIIVHDNDTRVPDSLQLQSEPEVTNNTFTEHRVSVSEIVEEEPEIVPEPEADRSYSESWQEYRGGVGERNGDVRSGGFNPKLMRSNSSVSWRNGQGMIGGGGGFGNVSMRKSDVQGNGLGLELGGRKGRDEFVGLERNRRARYSSPNSIDNNGLLRLYLGSRRNGSGKGRSNQAHSIARSVLRLY*






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