SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09100 | AT | Annotation by Michelle Graham. TAIR10: mRNA capping enzyme family protein | chr3:2788435-2792913 REVERSE LENGTH=672 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006370 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 7-methylguanosine mRNA capping | SoyBase | N/A | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0006470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0016311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dephosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003910 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA ligase (ATP) activity | SoyBase | N/A | ISS |
| GO:0004484 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mRNA guanylyltransferase activity | SoyBase | N/A | ISS |
| GO:0004651 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polynucleotide 5'-phosphatase activity | SoyBase | N/A | ISS |
| GO:0004725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008138 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| KOG2386 | KOG | mRNA capping enzyme, guanylyltransferase (alpha) subunit | JGI | ISS | |
| PTHR10367 | Panther | MRNA CAPPING ENZYME | JGI | ISS | |
| PTHR10367:SF0 | Panther | MRNA CAPPING ENZYME | JGI | ISS | |
| PF00782 | PFAM | Dual specificity phosphatase, catalytic domain | JGI | ISS | |
| PF01331 | PFAM | mRNA capping enzyme, catalytic domain | JGI | ISS | |
| PF03919 | PFAM | mRNA capping enzyme, C-terminal domain | JGI | ISS | |
| UniRef100_G7JLW2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA-capping enzyme n=2 Tax=Medicago truncatula RepID=G7JLW2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F277 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F277 related cluster n=1 Tax=unknown RepID=UPI000233F277 | SoyBase | E_val: 0 | ISS |
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Glyma18g42375 not represented in the dataset |
Glyma18g42375 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g17420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g196200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g42375.1 sequence type=CDS gene model=Glyma18g42375 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAGTTGCTGTGGATTTGAATGCCTCACCTGTGCCAGAGGACGATCAAGATGATTTTGGGGACCAGGTTGAAGAGTACCATGCTCCAGAAGAGCGTGTGGAATCTGCAGTTGATATTGCTCGCCGGGAACGTGAAGAAAGAAAAAGAAAGTTGAAAAGAGAACGTTCAGATGACAAACCTGTGCAAGTATCACAGTCACCTGGACATGATCAGTTATTTCATACTAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCCAGGTTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTATTGCATGATACCATCGAAGGTTCCACTTGGTGAATCATTCAATGACTACATCATTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAGCTTGGTCTGGTAATTGATTTGACGAATACTTCTCGATACTATCCAGTAGCAGATTTAAAGAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAAGGGCCGCAATTCTGTACCTGATAATTTATCTGTTAATCATTTTGTCTATGAGGTTACACAATTTCTATTTCGTCAAAAACACTCGAGGAAGTATATACTTGTTCATTGTACACATGGTCATAATCGGACAGGATACATGATCATCCATTATCTGATGCGCACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGTACGCCCTCCGGGAATCTATAAACCTGAGTACATTGATGCATTATATGCATTTTATCATGAAAAAAAGCCTGAAATGATAGTTTGTCCTCCTACCCCCAAGTGGAAGAGAACTCCTGAGCTTGTTGATCTCAATGGTGAAGCAATGCCAGATGATGACGATGATGATGGAGTGCCAGGCTCTCCTTTGCATGAGAATCATGAGACTGACACTATAATGACAAATGATGATGTTTTGGGTGATGAGATTCCTAATGATCAGCAAGATGCATTTCGTCAGTTCTGCTTTCAAACACTCAAACTAGGTGTTGGGGCCAGAGGGCACATGCAATTCCCAGGGTCACATCCAGTTTCTTTAAACAGGGAGAATTTACAACTGTTACGACAGCGTTATTATTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGACGGATGTTACTTGATTGATAGAAGCTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGATTACAAATGATGGCATGGCTGAGAAGACCCACCACTTCACATTACTTGATGGGGAGATGATTATCGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTCATATATGATCTGATGGCAGTCAATGGAGTATCAGTAATAGAGCGACCATTTTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTTCCAGAGCAGAAATCCTTACTATAGATATGACATGGAGCCATTCCGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAGCGAATTCATACCAAAACTCTCACATGATGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTACATACCTCGCACTCATGAAGGCCTCTTAAAGTGGAAATATGCTGATCTAAATTCAGTTGATTTTCTCTTTGAGATTGATAACGATTGTCAGCTGCTTTTTCTGTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTACAGGGTTGCATTTGAAGAAGGTTCGAATCCCTTGCATTATTCTGGAAAGATCATTGAGTGTTCTTGGGATTCTGATAGACAGGAATGGATATTCAAGCGAATCAGAACAGATAAATCAACTCCAAATGACTTTAATACTTATAGAAAGGTGATGCGAAGTATAAGAGACAATATCACAGAGGATATCCTGTTGAATGAAATAAGTGAGATAATTCGCCTTCCCATGTATGCAGACAGGATAAGAATTGATAGCAAAGCCAATCACCACACCAACATGTCACGGCGAAGGTAA
>Glyma18g42375.1 sequence type=predicted peptide gene model=Glyma18g42375 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIVAVDLNASPVPEDDQDDFGDQVEEYHAPEERVESAVDIARREREERKRKLKRERSDDKPVQVSQSPGHDQLFHTKILKSYDRSKLPPGWLDCPSFGQEIYCMIPSKVPLGESFNDYIIPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVADLKKEGIKHVKIQCKGRNSVPDNLSVNHFVYEVTQFLFRQKHSRKYILVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDVRPPGIYKPEYIDALYAFYHEKKPEMIVCPPTPKWKRTPELVDLNGEAMPDDDDDDGVPGSPLHENHETDTIMTNDDVLGDEIPNDQQDAFRQFCFQTLKLGVGARGHMQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRITNDGMAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNGVSVIERPFYERWKMLEKEVIEPRNQERFQSRNPYYRYDMEPFRVRRKDFWLLSTVTKLLSEFIPKLSHDADGLIFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEIDNDCQLLFLYERGKKKLMEGYRVAFEEGSNPLHYSGKIIECSWDSDRQEWIFKRIRTDKSTPNDFNTYRKVMRSIRDNITEDILLNEISEIIRLPMYADRIRIDSKANHHTNMSRRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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