SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38040 | AT | Annotation by Michelle Graham. TAIR10: acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769 | SoyBase | E_val: 0 | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0009317 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: acetyl-CoA carboxylase complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003989 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA carboxylase activity | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| PTHR22855 | Panther | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED | JGI | ISS | |
| PTHR22855:SF3 | Panther | ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE ALPHA | JGI | ISS | |
| PF01039 | PFAM | Carboxyl transferase domain | JGI | ISS | |
| PF03255 | PFAM | Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit | JGI | ISS | |
| UniRef100_I1N2T9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2T9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LLQ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carboxyl transferase alpha subunit n=1 Tax=Glycine max RepID=Q9LLQ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g42325 not represented in the dataset |
Glyma18g42325 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g196000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g42325.2 sequence type=transcript gene model=Glyma18g42325 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTACAGGAAGGCCCTTCGCTTGATGGAATATGCAGATCATCATGGGTTCCCCATAGTTACTTTCATTGACACGCCTGGGGCATATGCTGACCTTAAATCAGAGGAACTAGGACAGGGTGAAGCGATTGCTCACAATTTGAGATCCATGTTTGGTCTGAAGGTGCCAGTTATATCTATAGTTATTGGAGAAGGTGGTTCGGGTGGTGCCCTAGCCATTGGATGTGCTAATAAATTACTCATGCTTGAAAATGCTGTTTTTTATGTTGCCAGTCCAGAGGCATGTGCAGCAATCTTGTGGAAGACCGCCAAAGCTTCTCCAAAGGCTGCTGAGAAATTGAAGATTACTGCCACTGAATTGTGCAAATTACAAATTGCAGACGGTGTTATACCTGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGATGAACTCACGAAGATGAACACAGAAGAACTGTTAAAACATCGCATGCTTAAGTTCAGAAAGATTGGTGGATTCCAGGAAGGTATTCCTATAGATCCCAAGAGAAAAGCCAACATGAAGAAGAGGGATCTATCTATTGCTAAGATTCCTGATGCTGAACTAGAAGTTGAGGTTGAGAAACTGAAGCAACAGGTTTTGGAAGCTAAGGAATCTTCTCCTGTTCCTCCAAAACTAGATCTGGATGAGATGCTAAAGCAACTGGCAAGGGAGGTCGGTCTAGAATACTCTGAGGCAGTTAAAGCCACGGGCTTGACAGACAGTTTGCTGAAACTAAGGGAGGAAGTTTCAAAAGCAAATGCAGATAGTCAAATTGTTGATCCATTGCTGAAGGATAAGATAGAAAAGCTAAGGGTGGAGTTTGAACAGCAATTGCGTGCAGCTCCCAATTATGGTAGGCTGCAGAATAAGTTTAAGTATCTGAGCGAATTATGTAAAGTAAAGCTTCTTTCAGATGCAAACAAGGACAATCAGGCTGTCACCTTTAAGCAAGAGTTGGAGAAAAAAGTTGATAATGCCTTGAGTGATCCAAAAATAAGGGAAACATTTGAAGCATTAAAGGCTGAAATTAAAGGTGCTGGTGCATCCTCGGCAAGTGATTTGGATGACGAGTTGAAGAAGAAAATCGTTGGGTTTATGATAGAACTAAAAGAAGTAAAAGAAGTAAAAGAAGTAATAGAAAATCAAATTGAAAGTTTGGTAAACTCATCGGATGATATTAAGAGCAAGATACTGCAATTGAAATTGGAGCTTCCTAAGGCTGGAGAGACGCCTGATTCAGAATCAAATAATAGAATTGGTGATTTTATATTTAAAAAATCATCTAAAATTATTATGGCCATACTTCTTAGAGACATGTTTTGGTAATTTTAAGGAGATACCGTGTTAATGGTGGCTAATATTTTTTCTATAATCTTCCAATAGAGGACCAGAAGAGGGAATAAAATTGAAAACCATTTTGTATTTGTTTGAGTCACAATGTTGCAGTTATATTTAGATTGACTTTTTATGTTTTCTTTTCTTTTCATGTTCATTTTGCTCTTTTTTAATTATTTAAAATGTTAAAGTTCTCCCTGAATAGACTTAGATGAACATTGTATAAATTGTTTGAGTTTGAGGAACCGAGTAATAATATGACGCGTGGTGCTGTAATGTTATTTGCAAGAATTATTAGCCCTACTTTTTGGTTTCTGAGGGAAGGGGTTGACAATGTTG
>Glyma18g42325.1 sequence type=CDS gene model=Glyma18g42325 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCTTCTTCTGCATCTCTTTCTGGTGCTTCTGCTTCGGATCTTCTGAGGAGTTCAACCAGCGGTTTCAATGGTGTTCCTTTGAGAACCTTGGGGAAGGGAAAGTTGGTTTTGAAGAGGAGGGACTTTACAGTTGCTGCTAAGCTGAGGAAGGTGAAGAAGCATGAATATCCTTGGCCTGCTAACCCTGATCCCAATGTGAAAGGTGGGGTGCTGAGCCACCTTTCCTTGTTCAAGCCACTCAAGGAGAAGCCAAAGCCTGTCACTTTGGATTTTGAAAAGCCTCTTGTTGATCTGCAAAAGAAGATCATTGATGTACAGAAGATGGCGAACGAAACTGGACTGGACTTCAGTGATCAGATTCTCTCATTGGAGAACAAGTACCAGCAGGCTTTAAAGGATCTGTATACGCATCTGACTCCTATTCAGCGGGTCAACATCGCACGGCACCCTAACAGGCCAACTTTCCTTGATCATGTCTTTAACATAACTGAAAAGTTTGTTGAACTCCATGGTGATCGGGCAGGTTATGATGATCCTGCTATTGTTACTGGTCTAGGGACTATAGATGGTAGAAGCTACATGTTCATCGGTCACCAAAAGGGTAGAAATACTAAAGAAAACATTCAGCGTAACTTTGGGATGCCAACTCCTCATGGTTACAGGAAGGCCCTTCGCTTGATGGAATATGCAGATCATCATGGGTTCCCCATAGTTACTTTCATTGACACGCCTGGGGCATATGCTGACCTTAAATCAGAGGAACTAGGACAGGGTGAAGCGATTGCTCACAATTTGAGATCCATGTTTGGTCTGAAGGTGCCAGTTATATCTATAGTTATTGGAGAAGGTGGTTCGGGTGGTGCCCTAGCCATTGGATGTGCTAATAAATTACTCATGCTTGAAAATGCTGTTTTTTATGTTGCCAGTCCAGAGGCATGTGCAGCAATCTTGTGGAAGACCGCCAAAGCTTCTCCAAAGGCTGCTGAGAAATTGAAGATTACTGCCACTGAATTGTGCAAATTACAAATTGCAGACGGTGTTATACCTGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGATGAACTCACGAAGATGAACACAGAAGAACTGTTAAAACATCGCATGCTTAAGTTCAGAAAGATTGGTGGATTCCAGGAAGGTATTCCTATAGATCCCAAGAGAAAAGCCAACATGAAGAAGAGGGATCTATCTATTGCTAAGATTCCTGATGCTGAACTAGAAGTTGAGGTTGAGAAACTGAAGCAACAGGTTTTGGAAGCTAAGGAATCTTCTCCTGTTCCTCCAAAACTAGATCTGGATGAGATGCTAAAGCAACTGGCAAGGGAGGTCGGTCTAGAATACTCTGAGGCAGTTAAAGCCACGGGCTTGACAGACAGTTTGCTGAAACTAAGGGAGGAAGTTTCAAAAGCAAATGCAGATAGTCAAATTGTTGATCCATTGCTGAAGGATAAGATAGAAAAGCTAAGGGTGGAGTTTGAACAGCAATTGCGTGCAGCTCCCAATTATGGTAGGCTGCAGAATAAGTTTAAGTATCTGAGCGAATTATGTAAAGTAAAGCTTCTTTCAGATGCAAACAAGGACAATCAGGCTGTCACCTTTAAGCAAGAGTTGGAGAAAAAAGTTGATAATGCCTTGAGTGATCCAAAAATAAGGGAAACATTTGAAGCATTAAAGGCTGAAATTAAAGGTGCTGGTGCATCCTCGGCAAGTGATTTGGATGACGAGTTGAAGAAGAAAATCGTTGGGTTTATGATAGAACTAAAAGAAGTAAAAGAAGTAAAAGAAGTAATAGAAAATCAAATTGAAAGTTTGGTAAACTCATCGGATGATATTAAGAGCAAGATACTGCAATTGAAATTGGAGCTTCCTAAGGCTGGAGAGACGCCTGATTCAGAATCAAATAATAGAATTGGTGATTTTATATTTAAAAAATCATCTAAAATTATTATGGCCATACTTCTTAGAGACATGTTTTGGTAA >Glyma18g42325.2 sequence type=CDS gene model=Glyma18g42325 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATATGCAGATCATCATGGGTTCCCCATAGTTACTTTCATTGACACGCCTGGGGCATATGCTGACCTTAAATCAGAGGAACTAGGACAGGGTGAAGCGATTGCTCACAATTTGAGATCCATGTTTGGTCTGAAGGTGCCAGTTATATCTATAGTTATTGGAGAAGGTGGTTCGGGTGGTGCCCTAGCCATTGGATGTGCTAATAAATTACTCATGCTTGAAAATGCTGTTTTTTATGTTGCCAGTCCAGAGGCATGTGCAGCAATCTTGTGGAAGACCGCCAAAGCTTCTCCAAAGGCTGCTGAGAAATTGAAGATTACTGCCACTGAATTGTGCAAATTACAAATTGCAGACGGTGTTATACCTGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGATGAACTCACGAAGATGAACACAGAAGAACTGTTAAAACATCGCATGCTTAAGTTCAGAAAGATTGGTGGATTCCAGGAAGGTATTCCTATAGATCCCAAGAGAAAAGCCAACATGAAGAAGAGGGATCTATCTATTGCTAAGATTCCTGATGCTGAACTAGAAGTTGAGGTTGAGAAACTGAAGCAACAGGTTTTGGAAGCTAAGGAATCTTCTCCTGTTCCTCCAAAACTAGATCTGGATGAGATGCTAAAGCAACTGGCAAGGGAGGTCGGTCTAGAATACTCTGAGGCAGTTAAAGCCACGGGCTTGACAGACAGTTTGCTGAAACTAAGGGAGGAAGTTTCAAAAGCAAATGCAGATAGTCAAATTGTTGATCCATTGCTGAAGGATAAGATAGAAAAGCTAAGGGTGGAGTTTGAACAGCAATTGCGTGCAGCTCCCAATTATGGTAGGCTGCAGAATAAGTTTAAGTATCTGAGCGAATTATGTAAAGTAAAGCTTCTTTCAGATGCAAACAAGGACAATCAGGCTGTCACCTTTAAGCAAGAGTTGGAGAAAAAAGTTGATAATGCCTTGAGTGATCCAAAAATAAGGGAAACATTTGAAGCATTAAAGGCTGAAATTAAAGGTGCTGGTGCATCCTCGGCAAGTGATTTGGATGACGAGTTGAAGAAGAAAATCGTTGGGTTTATGATAGAACTAAAAGAAGTAAAAGAAGTAAAAGAAGTAATAGAAAATCAAATTGAAAGTTTGGTAAACTCATCGGATGATATTAAGAGCAAGATACTGCAATTGAAATTGGAGCTTCCTAAGGCTGGAGAGACGCCTGATTCAGAATCAAATAATAGAATTGGTGATTTTATATTTAAAAAATCATCTAAAATTATTATGGCCATACTTCTTAGAGACATGTTTTGGTAA
>Glyma18g42325.1 sequence type=predicted peptide gene model=Glyma18g42325 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASSASLSGASASDLLRSSTSGFNGVPLRTLGKGKLVLKRRDFTVAAKLRKVKKHEYPWPANPDPNVKGGVLSHLSLFKPLKEKPKPVTLDFEKPLVDLQKKIIDVQKMANETGLDFSDQILSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGLGTIDGRSYMFIGHQKGRNTKENIQRNFGMPTPHGYRKALRLMEYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRSMFGLKVPVISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIPEPLGGAHADPEWTSQQIKKAIKETMDELTKMNTEELLKHRMLKFRKIGGFQEGIPIDPKRKANMKKRDLSIAKIPDAELEVEVEKLKQQVLEAKESSPVPPKLDLDEMLKQLAREVGLEYSEAVKATGLTDSLLKLREEVSKANADSQIVDPLLKDKIEKLRVEFEQQLRAAPNYGRLQNKFKYLSELCKVKLLSDANKDNQAVTFKQELEKKVDNALSDPKIRETFEALKAEIKGAGASSASDLDDELKKKIVGFMIELKEVKEVKEVIENQIESLVNSSDDIKSKILQLKLELPKAGETPDSESNNRIGDFIFKKSSKIIMAILLRDMFW* >Glyma18g42325.2 sequence type=predicted peptide gene model=Glyma18g42325 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRSMFGLKVPVISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIPEPLGGAHADPEWTSQQIKKAIKETMDELTKMNTEELLKHRMLKFRKIGGFQEGIPIDPKRKANMKKRDLSIAKIPDAELEVEVEKLKQQVLEAKESSPVPPKLDLDEMLKQLAREVGLEYSEAVKATGLTDSLLKLREEVSKANADSQIVDPLLKDKIEKLRVEFEQQLRAAPNYGRLQNKFKYLSELCKVKLLSDANKDNQAVTFKQELEKKVDNALSDPKIRETFEALKAEIKGAGASSASDLDDELKKKIVGFMIELKEVKEVKEVIENQIESLVNSSDDIKSKILQLKLELPKAGETPDSESNNRIGDFIFKKSSKIIMAILLRDMFW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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