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Report for Sequence Feature Glyma18g42290

Feature Type:gene_model
Chromosome:Gm18
Start:51315153
stop:51316639
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g42290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01160AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:54280-55727 FORWARD LENGTH=360 SoyBaseE_val: 6.00E-44ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR13480Panther ZINC FINGER-RELATED JGI ISS
UniRef100_I1N2T6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2T6_SOYBN SoyBaseE_val: 3.00E-174ISS
UniRef100_Q8LNT6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=3 Tax=Oryza sativa Japonica Group RepID=Q8LNT6_ORYSJ SoyBaseE_val: 2.00E-26ISS

Expression Patterns of Glyma18g42290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g42290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g42290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g42290
>Glyma18g42290.1   sequence type=CDS   gene model=Glyma18g42290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCTTGGAGCACAGGTGTGACGATCGAATTCATAAGATTCAAACAATTAAAATGATGGAAGGAATCCTCATTTGTGTGGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAAGCTGATTTTGAATCTCATATCCAAGACAGCCACGGCAGCCTTCTTCGACCCAATGCAGATAAAGAAGATGGAAATGAGTCGGAGGCACAGAGTGTTAGGCAATCAACGGCTTCAGATTCCACTGCTCGCGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCAAATTCCCAGCAACATGATCTGGAAGACAAATCTCGTAGACAGACACACCTAGAGAGCAACCAAAGCCACCATATTATGCATCCCCCACAAGATCCTTCCCAGTTTGCTGACAGACAACAGGAAGTTGGTCCAGAGGCCCCATTTCTCGGGTATCCAGCAATGCACCCTGCAAAAACTTCCAATGTTCCCTTGCTGGTTACTTCAAACCCAATGCCGGACCCTCCCATGACATTTGGCTATCCCCCTTACCCAAACGAACGAGCTCAGCCATTTTACGGTGCTCCCTATGATATGCCTAGGCAGGACTCAGGTTCTGATGTAGGTGGGGACCAGAGTTCATTACTGGGTTTCCCACAAGGTGTCCCAAATGGCCCAAATTTTCCAGGAAATTATCCCCAGCCATGGAATTCAGGAATGGGTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGTTGTGGATCCAAGGGAGGGCAAAGGTATATTGGCACCACAGCCCATGCCCCTCCCACCGCCACCTCCCCCTCCATCCCACATGTCATATGGGAAACAGAACTACTATTCTGGAGAGCTTGGGCATGAT
Predicted protein sequences of Glyma18g42290
>Glyma18g42290.1   sequence type=predicted peptide   gene model=Glyma18g42290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLEHRCDDRIHKIQTIKMMEGILICVAPHCLKSFLKKADFESHIQDSHGSLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKSRRQTHLESNQSHHIMHPPQDPSQFADRQQEVGPEAPFLGYPAMHPAKTSNVPLLVTSNPMPDPPMTFGYPPYPNERAQPFYGAPYDMPRQDSGSDVGGDQSSLLGFPQGVPNGPNFPGNYPQPWNSGMGGVPFEQAQGGMVVDPREGKGILAPQPMPLPPPPPPPSHMSYGKQNYYSGELGHD






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